Variant report

Variant	rs11218458
Chromosome Location	chr11:121798117-121798118
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1079431	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10892786	0.85[EUR][1000 genomes]
rs11218457	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11218466	0.85[EUR][1000 genomes]
rs1219419	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12271581	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12281134	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12281908	0.85[EUR][1000 genomes]
rs1235044	0.85[EUR][1000 genomes]
rs1530665	0.92[ASN][1000 genomes]
rs1789735	0.85[EUR][1000 genomes]
rs3802909	0.94[ASN][1000 genomes]
rs3953235	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59708244	0.85[EUR][1000 genomes]
rs7934350	0.97[ASN][1000 genomes]
rs7939651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11218458	PKNOX2	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121793000-121799000	Weak transcription	Fetal Kidney	kidney
2	chr11:121794800-121798400	Weak transcription	Fetal Brain Female	brain
3	chr11:121797400-121799600	Enhancers	HepG2	liver
4	chr11:121797400-121800000	Enhancers	Fetal Brain Male	brain
5	chr11:121797800-121799000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:121797800-121799400	Enhancers	Brain Germinal Matrix	brain
7	chr11:121797800-121803800	Enhancers	Liver	Liver
8	chr11:121798000-121798200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr11:121798000-121798200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:121798000-121798600	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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