Variant report

Variant	rs11224857
Chromosome Location	chr11:101433245-101433246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11224823	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224832	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11224834	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11224835	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11224841	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11224842	0.84[ASN][1000 genomes]
rs11224845	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11224847	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11224849	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11224850	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11224851	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11224858	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224876	0.82[EUR][1000 genomes]
rs11224879	0.89[CEU][hapmap]
rs11224952	0.83[CEU][hapmap]
rs11224956	0.81[CEU][hapmap]
rs11493972	0.82[EUR][1000 genomes]
rs12146595	0.86[EUR][1000 genomes]
rs12361061	0.81[EUR][1000 genomes]
rs12361104	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12362645	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12363799	0.81[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12364903	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785250	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12789602	0.91[CEU][hapmap]
rs12791029	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12792271	0.91[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs12793532	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12796392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12798282	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12798819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12800593	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12800634	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12801413	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12802352	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12803724	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12806857	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12807277	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12807755	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34051918	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35981117	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3824935	0.91[CEU][hapmap]
rs55773425	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66638471	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67343405	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67536177	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103450	0.82[EUR][1000 genomes]
rs7119370	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7121108	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs7126833	0.91[CEU][hapmap]
rs71462692	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7926503	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv556134	chr11:101398450-101436689	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv556135	chr11:101399510-101436689	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv519281	chr11:101404645-101436689	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv468852	chr11:101404645-101436689	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv556136	chr11:101404645-101436689	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv556137	chr11:101405218-101436689	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv2761703	chr11:101406049-101439667	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv556138	chr11:101409478-101436997	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101416400-101437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:101424400-101437200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:101426400-101447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:101427400-101433600	Weak transcription	NHLF	lung
5	chr11:101429600-101437400	Weak transcription	Ovary	ovary
6	chr11:101431400-101437400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:101431800-101433400	Weak transcription	NHDF-Ad	bronchial

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