Variant report

Variant	rs11224877
Chromosome Location	chr11:101445152-101445153
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10791500	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10791505	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895135	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10895142	0.86[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10895143	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10895149	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10895150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11224829	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11224852	0.86[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11224853	0.86[CEU][hapmap];0.85[JPT][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11224864	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11224880	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224887	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11224889	0.89[ASN][1000 genomes]
rs12222757	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12226165	0.87[CEU][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12419234	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12575190	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12792618	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17096904	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17096918	0.87[CEU][hapmap];0.85[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2154994	0.89[AMR][1000 genomes]
rs2154995	0.89[AMR][1000 genomes]
rs2516348	0.81[ASN][1000 genomes]
rs35868294	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36168048	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824934	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4503499	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs7109771	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7481496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947991	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3489634	chr11:101443892-101446490	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3489635	chr11:101444042-101446102	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3465431	chr11:101444478-101445566	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3489637	chr11:101444510-101445559	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3328819	chr11:101444522-101445538	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3465420	chr11:101444524-101445544	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3465442	chr11:101444524-101445544	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3465409	chr11:101444534-101445637	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3489636	chr11:101444536-101445556	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3489638	chr11:101444553-101445498	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3489639	chr11:101444553-101445498	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101426400-101447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:101438400-101445400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:101443800-101446000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:101444400-101449200	Enhancers	NHDF-Ad	bronchial
5	chr11:101444800-101446000	Weak transcription	Fetal Lung	lung
6	chr11:101445000-101446000	Weak transcription	NHLF	lung

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