Variant report

Variant	rs947991
Chromosome Location	chr11:101484718-101484719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIAA1377-1	chr11:101483827-101485776	ucscGeneNc_uc001pgr_2

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10791505	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10895135	0.87[CEU][hapmap]
rs10895142	0.88[CEU][hapmap];0.83[MEX][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs10895143	0.80[AMR][1000 genomes]
rs10895149	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895150	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224829	0.88[CEU][hapmap];0.94[MEX][hapmap]
rs11224852	1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs11224853	0.88[CEU][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.80[AMR][1000 genomes]
rs11224864	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11224877	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11224880	1.00[CEU][hapmap];0.85[ASN][1000 genomes]
rs11224887	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224889	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12222757	0.85[ASN][1000 genomes]
rs12226165	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs12575190	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12575264	0.86[ASN][1000 genomes]
rs12576445	0.81[ASN][1000 genomes]
rs12792618	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17096918	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1938829	0.86[ASN][1000 genomes]
rs2154994	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2154995	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2508259	0.98[EUR][1000 genomes]
rs2516348	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35868294	0.85[ASN][1000 genomes]
rs36168048	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3824934	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4384358	0.84[ASN][1000 genomes]
rs4503499	0.88[CEU][hapmap];0.83[MEX][hapmap]
rs7481496	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101481200-101489800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:101481400-101487600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:101484000-101488200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:101484400-101488400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:101484600-101488200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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