Variant report

Variant	rs2154995
Chromosome Location	chr11:101489300-101489301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101488247..101490096-chr11:101496460..101499129,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10791505	0.89[AMR][1000 genomes]
rs10895135	0.88[CEU][hapmap]
rs10895142	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs10895149	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10895150	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11224829	0.88[CEU][hapmap]
rs11224852	1.00[YRI][hapmap]
rs11224853	0.88[CEU][hapmap]
rs11224864	0.89[AMR][1000 genomes]
rs11224877	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs11224880	1.00[CEU][hapmap]
rs11224887	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11224889	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12226165	0.88[CEU][hapmap]
rs12575190	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12575264	0.95[ASN][1000 genomes]
rs12576445	0.84[ASN][1000 genomes]
rs12577857	0.84[ASN][1000 genomes]
rs12792618	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17096918	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs1938829	0.95[ASN][1000 genomes]
rs2154994	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508259	0.96[EUR][1000 genomes]
rs2516348	0.86[EUR][1000 genomes]
rs36168048	0.84[AMR][1000 genomes]
rs3824934	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs4384358	0.88[ASN][1000 genomes]
rs4503499	0.88[CEU][hapmap]
rs61591678	0.83[ASN][1000 genomes]
rs7481496	0.89[AMR][1000 genomes]
rs947991	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101481200-101489800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:101487200-101490400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:101487600-101489400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:101487800-101490000	Enhancers	HMEC	breast
5	chr11:101488200-101489800	Enhancers	NHDF-Ad	bronchial
6	chr11:101488200-101490000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:101488200-101490400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:101488400-101490000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:101488600-101489600	Enhancers	NH-A	brain
10	chr11:101488600-101490000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:101489000-101489600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr11:101489200-101489600	Flanking Active TSS	NHEK	skin

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