Variant report
| Variant | rs1938829 |
|---|---|
| Chromosome Location | chr11:101507954-101507955 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10895135 | 0.87[CEU][hapmap];0.82[AMR][1000 genomes] |
| rs10895142 | 0.87[CEU][hapmap];0.84[AMR][1000 genomes] |
| rs10895143 | 0.84[AMR][1000 genomes] |
| rs10895149 | 0.82[ASN][1000 genomes] |
| rs10895150 | 0.82[CHB][hapmap];0.96[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs11224829 | 0.87[CEU][hapmap];0.82[AMR][1000 genomes] |
| rs11224852 | 0.84[AMR][1000 genomes] |
| rs11224853 | 0.87[CEU][hapmap];0.84[AMR][1000 genomes] |
| rs11224877 | 0.91[JPT][hapmap] |
| rs11224887 | 0.82[ASN][1000 genomes] |
| rs11224889 | 0.82[ASN][1000 genomes] |
| rs12226165 | 1.00[CEU][hapmap] |
| rs12419234 | 0.82[AMR][1000 genomes] |
| rs12575190 | 0.85[ASN][1000 genomes] |
| rs12575264 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12576445 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12577857 | 0.87[ASN][1000 genomes] |
| rs12792618 | 0.82[ASN][1000 genomes] |
| rs17096904 | 0.82[AMR][1000 genomes] |
| rs2154994 | 0.95[ASN][1000 genomes] |
| rs2154995 | 0.95[ASN][1000 genomes] |
| rs3824934 | 0.82[JPT][hapmap] |
| rs4384358 | 0.93[ASN][1000 genomes] |
| rs4503499 | 0.87[CEU][hapmap] |
| rs61591678 | 0.86[ASN][1000 genomes] |
| rs7109771 | 0.82[AMR][1000 genomes] |
| rs947991 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898330 | chr11:101243644-101722031 | Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1052159 | chr11:101439655-101853293 | Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1051457 | chr11:101446705-101837650 | Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv530645 | chr11:101451416-101778666 | Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:101507000-101509600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr11:101507000-101509800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
