Variant report

Variant	rs11225073
Chromosome Location	chr11:101807456-101807457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10501993	0.84[CHB][hapmap]
rs10895219	0.90[CHB][hapmap];0.93[GIH][hapmap];0.89[MEX][hapmap];0.81[AMR][1000 genomes]
rs10895221	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10895223	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10895225	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10895226	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895227	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10895230	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10895232	0.89[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10895234	0.89[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10895236	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11225050	0.84[CHB][hapmap];0.93[GIH][hapmap]
rs11225051	0.84[CHB][hapmap]
rs11225054	0.84[CHB][hapmap]
rs11225055	0.89[GIH][hapmap];0.81[MEX][hapmap]
rs11225056	0.90[CHB][hapmap];0.81[AMR][1000 genomes]
rs11225058	0.81[AMR][1000 genomes]
rs11225061	0.90[CHB][hapmap]
rs11225062	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11225063	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11225064	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11225065	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11225069	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11225071	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11225072	0.95[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11225074	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11225078	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11225079	1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11225081	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11225083	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11225085	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11225088	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11225089	0.89[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11225090	0.89[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11225091	0.88[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11225094	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11225095	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11225096	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11225097	0.89[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11225098	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11225099	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11225100	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11225102	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12049892	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12099244	0.89[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12221779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12222135	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12223859	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12225504	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12573997	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12576566	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12577623	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.93[LWK][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441925	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1441926	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1441927	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17174267	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35951904	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3781784	0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs41518251	1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4754032	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4754817	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4754818	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4754819	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4754821	0.93[JPT][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4754822	0.89[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4754823	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4754824	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4754825	0.89[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4754826	0.82[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4754827	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4754828	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7109121	0.90[CHB][hapmap];0.80[CHD][hapmap];0.89[GIH][hapmap]
rs7125076	0.84[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap]
rs7929528	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9326318	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9633927	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9633928	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs981912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv469989	chr11:101790671-101857758	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv556140	chr11:101790671-101857758	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101787200-101820200	Weak transcription	Brain Substantia Nigra	brain
2	chr11:101787400-101815600	Weak transcription	Adipose Nuclei	Adipose
3	chr11:101787400-101818800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:101787400-101820400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:101787400-101827800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:101787400-101839200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:101787400-101861200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:101787400-101866000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:101787600-101809200	Weak transcription	A549	lung
10	chr11:101788200-101837800	Weak transcription	HUVEC	blood vessel
11	chr11:101789000-101815200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:101793800-101816000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:101798400-101829200	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:101800400-101815200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:101800400-101816400	Weak transcription	Ovary	ovary
16	chr11:101800400-101826400	Weak transcription	Aorta	Aorta
17	chr11:101800400-101830200	Weak transcription	Fetal Lung	lung
18	chr11:101800600-101811600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:101800600-101820400	Weak transcription	Brain Anterior Caudate	brain
20	chr11:101801000-101815800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:101805000-101811200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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