Variant report

Variant	rs11225061
Chromosome Location	chr11:101788425-101788426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10501993	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10895218	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10895219	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10895221	0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10895223	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10895225	0.87[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10895226	0.90[CHB][hapmap]
rs10895227	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10895230	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10895232	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10895234	0.95[EUR][1000 genomes]
rs10895236	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11225050	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11225051	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11225052	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11225054	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11225055	0.89[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs11225056	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11225058	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11225062	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225063	0.90[CHB][hapmap]
rs11225064	0.90[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225069	0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225071	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225072	0.88[CEU][hapmap];0.84[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225073	0.90[CHB][hapmap]
rs11225074	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11225078	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225079	0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225081	0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11225083	0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11225085	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225088	0.95[EUR][1000 genomes]
rs11225089	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225090	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225091	0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225094	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225095	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225096	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225097	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225098	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11225099	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225100	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225102	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12049892	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12099244	0.95[EUR][1000 genomes]
rs12221779	0.89[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12222135	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12223859	0.95[EUR][1000 genomes]
rs12224394	0.89[EUR][1000 genomes]
rs12225504	0.81[AMR][1000 genomes]
rs12573997	0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12576566	0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs12577623	0.89[CHB][hapmap]
rs1441925	0.95[EUR][1000 genomes]
rs1441926	0.95[EUR][1000 genomes]
rs1441927	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17097379	0.89[EUR][1000 genomes]
rs35951904	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3781784	0.95[EUR][1000 genomes]
rs41518251	0.89[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4754032	0.95[EUR][1000 genomes]
rs4754034	0.89[EUR][1000 genomes]
rs4754817	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4754818	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4754819	0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4754821	0.95[EUR][1000 genomes]
rs4754822	0.95[EUR][1000 genomes]
rs4754823	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4754824	0.89[EUR][1000 genomes]
rs4754825	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4754826	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4754827	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4754828	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7103929	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7106678	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7107333	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7109121	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7125076	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7929528	0.95[EUR][1000 genomes]
rs9326318	0.95[EUR][1000 genomes]
rs9633927	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9633928	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101785400-101788600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr11:101785400-101789000	Active TSS	Brain Anterior Caudate	brain
3	chr11:101786200-101789000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:101786200-101792000	Weak transcription	Small Intestine	intestine
5	chr11:101786200-101802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:101786400-101789200	Weak transcription	Psoas Muscle	Psoas
7	chr11:101786400-101790200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:101787000-101801200	Weak transcription	Fetal Stomach	stomach
9	chr11:101787200-101791800	Weak transcription	Fetal Intestine Small	intestine
10	chr11:101787200-101800200	Weak transcription	Fetal Lung	lung
11	chr11:101787200-101802000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:101787200-101820200	Weak transcription	Brain Substantia Nigra	brain
13	chr11:101787400-101798800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:101787400-101799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:101787400-101800200	Weak transcription	Ovary	ovary
16	chr11:101787400-101800600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:101787400-101802600	Weak transcription	Brain Angular Gyrus	brain
18	chr11:101787400-101815600	Weak transcription	Adipose Nuclei	Adipose
19	chr11:101787400-101818800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:101787400-101820400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:101787400-101827800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:101787400-101839200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:101787400-101861200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:101787400-101866000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:101787600-101791400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:101787600-101809200	Weak transcription	A549	lung
27	chr11:101787800-101788600	Weak transcription	Aorta	Aorta
28	chr11:101787800-101789000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:101788200-101788600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:101788200-101800000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:101788200-101800000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:101788200-101837800	Weak transcription	HUVEC	blood vessel
33	chr11:101788400-101788600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:101788400-101789200	Enhancers	Fetal Brain Male	brain

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