Variant report

Variant	rs4754827
Chromosome Location	chr11:101865686-101865687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10501993	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10895218	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10895219	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10895221	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10895223	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10895225	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10895226	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10895227	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10895230	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895232	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895234	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895236	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225050	0.86[EUR][1000 genomes]
rs11225051	0.86[EUR][1000 genomes]
rs11225052	0.92[EUR][1000 genomes]
rs11225054	0.89[EUR][1000 genomes]
rs11225056	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11225058	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11225061	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11225062	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11225063	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11225064	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11225065	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11225069	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11225071	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11225072	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11225073	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11225074	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11225078	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11225079	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11225081	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11225083	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11225085	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11225088	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11225089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11225090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11225091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11225094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225098	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11225099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225100	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12049892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12099244	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221779	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12222135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12223859	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12224394	0.95[EUR][1000 genomes]
rs12225504	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12573997	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12576566	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577623	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1441925	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441926	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097379	0.95[EUR][1000 genomes]
rs17174267	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35951904	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3781784	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41518251	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4754032	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754034	0.95[EUR][1000 genomes]
rs4754817	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4754818	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4754819	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4754821	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4754822	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4754823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4754824	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4754825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754826	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4754828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103929	0.89[EUR][1000 genomes]
rs7106678	0.89[EUR][1000 genomes]
rs7107333	0.89[EUR][1000 genomes]
rs7109121	0.86[EUR][1000 genomes]
rs7125076	0.89[EUR][1000 genomes]
rs7929528	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326318	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633928	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs981912	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101787400-101866000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:101812200-101866600	Weak transcription	Fetal Brain Male	brain
3	chr11:101821200-101878400	Weak transcription	Brain Anterior Caudate	brain
4	chr11:101827200-101883400	Weak transcription	Aorta	Aorta
5	chr11:101834600-101876000	Weak transcription	Fetal Lung	lung
6	chr11:101842600-101871000	Weak transcription	Brain Substantia Nigra	brain
7	chr11:101847600-101870800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:101851600-101878200	Weak transcription	HUVEC	blood vessel
9	chr11:101851800-101870600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:101852200-101874800	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:101852800-101876000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:101853800-101868200	Weak transcription	Left Ventricle	heart
13	chr11:101854200-101874800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:101854400-101878200	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:101854800-101877600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:101855200-101874000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:101858400-101878200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:101859200-101869400	Weak transcription	Esophagus	oesophagus
19	chr11:101859400-101878200	Weak transcription	NHLF	lung
20	chr11:101859600-101878400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:101862800-101866600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:101863600-101878200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:101864000-101869600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:101864000-101878200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:101864200-101866200	Weak transcription	Ovary	ovary
26	chr11:101864200-101867200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:101864200-101868200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:101864200-101868200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:101864200-101868800	Enhancers	HepG2	liver
30	chr11:101864200-101869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:101864200-101878200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:101864200-101878200	Weak transcription	Fetal Brain Female	brain
33	chr11:101864200-101878400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:101864400-101872600	Weak transcription	Brain Angular Gyrus	brain
35	chr11:101864400-101872800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:101865200-101869200	Strong transcription	Adipose Nuclei	Adipose
37	chr11:101865600-101867400	Enhancers	Pancreatic Islets	Pancreatic Islet

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