Variant report

Variant	rs7103929
Chromosome Location	chr11:101768879-101768880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10501993	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10895218	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10895219	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10895221	0.89[EUR][1000 genomes]
rs10895223	0.84[EUR][1000 genomes]
rs10895225	0.89[EUR][1000 genomes]
rs10895227	0.89[EUR][1000 genomes]
rs10895230	0.89[EUR][1000 genomes]
rs10895232	0.84[EUR][1000 genomes]
rs10895234	0.89[EUR][1000 genomes]
rs10895236	0.87[EUR][1000 genomes]
rs11225050	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11225051	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11225052	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11225054	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11225055	0.93[ASN][1000 genomes]
rs11225056	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11225058	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11225061	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11225062	0.89[EUR][1000 genomes]
rs11225064	0.89[EUR][1000 genomes]
rs11225069	0.89[EUR][1000 genomes]
rs11225071	0.89[EUR][1000 genomes]
rs11225072	0.89[EUR][1000 genomes]
rs11225074	0.82[EUR][1000 genomes]
rs11225078	0.89[EUR][1000 genomes]
rs11225079	0.89[EUR][1000 genomes]
rs11225081	0.87[EUR][1000 genomes]
rs11225083	0.87[EUR][1000 genomes]
rs11225085	0.89[EUR][1000 genomes]
rs11225088	0.89[EUR][1000 genomes]
rs11225089	0.89[EUR][1000 genomes]
rs11225090	0.89[EUR][1000 genomes]
rs11225091	0.89[EUR][1000 genomes]
rs11225094	0.89[EUR][1000 genomes]
rs11225095	0.89[EUR][1000 genomes]
rs11225096	0.89[EUR][1000 genomes]
rs11225097	0.89[EUR][1000 genomes]
rs11225098	0.82[EUR][1000 genomes]
rs11225099	0.89[EUR][1000 genomes]
rs11225100	0.89[EUR][1000 genomes]
rs11225102	0.89[EUR][1000 genomes]
rs12049892	0.89[EUR][1000 genomes]
rs12099244	0.89[EUR][1000 genomes]
rs12221779	0.89[EUR][1000 genomes]
rs12222135	0.89[EUR][1000 genomes]
rs12223859	0.89[EUR][1000 genomes]
rs12224394	0.84[EUR][1000 genomes]
rs12573997	0.89[EUR][1000 genomes]
rs12576566	0.87[EUR][1000 genomes]
rs1441925	0.89[EUR][1000 genomes]
rs1441926	0.89[EUR][1000 genomes]
rs1441927	0.89[EUR][1000 genomes]
rs17097379	0.84[EUR][1000 genomes]
rs35951904	0.89[EUR][1000 genomes]
rs3781784	0.89[EUR][1000 genomes]
rs41518251	0.89[EUR][1000 genomes]
rs4754032	0.89[EUR][1000 genomes]
rs4754034	0.84[EUR][1000 genomes]
rs4754817	0.89[EUR][1000 genomes]
rs4754818	0.89[EUR][1000 genomes]
rs4754819	0.89[EUR][1000 genomes]
rs4754821	0.89[EUR][1000 genomes]
rs4754822	0.89[EUR][1000 genomes]
rs4754823	0.89[EUR][1000 genomes]
rs4754824	0.84[EUR][1000 genomes]
rs4754825	0.89[EUR][1000 genomes]
rs4754826	0.89[EUR][1000 genomes]
rs4754827	0.89[EUR][1000 genomes]
rs4754828	0.89[EUR][1000 genomes]
rs7106678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109121	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125076	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7929528	0.89[EUR][1000 genomes]
rs9326318	0.89[EUR][1000 genomes]
rs9633927	0.89[EUR][1000 genomes]
rs9633928	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101750200-101778200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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