Variant report

Variant	rs17097379
Chromosome Location	chr11:101880721-101880722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101722375..101723959-chr11:101880701..101883311,2	MCF-7	breast:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10501993	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs10895218	0.87[EUR][1000 genomes]
rs10895219	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10895221	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10895223	0.89[EUR][1000 genomes]
rs10895225	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10895226	0.82[JPT][hapmap]
rs10895227	0.95[EUR][1000 genomes]
rs10895230	0.95[EUR][1000 genomes]
rs10895232	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs10895234	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs10895236	0.92[EUR][1000 genomes]
rs10895260	0.85[CEU][hapmap]
rs11225050	0.82[EUR][1000 genomes]
rs11225051	0.82[EUR][1000 genomes]
rs11225052	0.87[EUR][1000 genomes]
rs11225054	0.84[EUR][1000 genomes]
rs11225056	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11225058	0.92[EUR][1000 genomes]
rs11225061	0.89[EUR][1000 genomes]
rs11225062	0.95[EUR][1000 genomes]
rs11225063	0.82[JPT][hapmap]
rs11225064	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11225069	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11225071	0.95[EUR][1000 genomes]
rs11225072	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11225073	0.82[JPT][hapmap]
rs11225074	0.87[EUR][1000 genomes]
rs11225078	0.95[EUR][1000 genomes]
rs11225079	1.00[CEU][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs11225081	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs11225083	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11225085	0.95[EUR][1000 genomes]
rs11225088	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[EUR][1000 genomes]
rs11225089	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs11225090	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs11225091	0.88[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs11225094	0.95[EUR][1000 genomes]
rs11225095	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[EUR][1000 genomes]
rs11225096	0.95[EUR][1000 genomes]
rs11225097	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs11225098	0.87[EUR][1000 genomes]
rs11225099	0.95[EUR][1000 genomes]
rs11225100	0.95[EUR][1000 genomes]
rs11225102	0.95[EUR][1000 genomes]
rs11225117	0.85[CEU][hapmap]
rs11225148	0.85[CEU][hapmap]
rs12049892	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[EUR][1000 genomes]
rs12099244	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs12221779	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12222135	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[EUR][1000 genomes]
rs12223859	0.95[EUR][1000 genomes]
rs12224394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573997	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12576566	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[EUR][1000 genomes]
rs1426396	0.87[CEU][hapmap]
rs1441925	0.95[EUR][1000 genomes]
rs1441926	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[EUR][1000 genomes]
rs1441927	0.95[EUR][1000 genomes]
rs35951904	0.95[EUR][1000 genomes]
rs3781784	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[EUR][1000 genomes]
rs41518251	0.87[CEU][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs4754032	0.95[EUR][1000 genomes]
rs4754034	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754817	0.95[EUR][1000 genomes]
rs4754818	0.95[EUR][1000 genomes]
rs4754819	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4754821	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4754822	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs4754823	0.95[EUR][1000 genomes]
rs4754824	0.89[EUR][1000 genomes]
rs4754825	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs4754826	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs4754827	0.95[EUR][1000 genomes]
rs4754828	0.95[EUR][1000 genomes]
rs7103929	0.84[EUR][1000 genomes]
rs7106678	0.84[EUR][1000 genomes]
rs7107333	0.84[EUR][1000 genomes]
rs7109121	0.82[EUR][1000 genomes]
rs7125076	0.84[EUR][1000 genomes]
rs7929528	0.95[EUR][1000 genomes]
rs9326318	0.95[EUR][1000 genomes]
rs9633927	0.95[EUR][1000 genomes]
rs9633928	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101827200-101883400	Weak transcription	Aorta	Aorta
2	chr11:101867000-101880800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:101869200-101881400	Weak transcription	Adipose Nuclei	Adipose
4	chr11:101873000-101880800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:101873400-101881400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:101876400-101881600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:101876600-101880800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:101876800-101881600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:101878000-101881600	Weak transcription	Fetal Heart	heart
10	chr11:101878600-101880800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:101878600-101880800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:101878600-101880800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:101878600-101880800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:101878600-101880800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:101878600-101880800	Weak transcription	Fetal Intestine Large	intestine
16	chr11:101878600-101881000	Weak transcription	Fetal Intestine Small	intestine
17	chr11:101878600-101881400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:101878600-101881400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:101878600-101881400	Weak transcription	Stomach Mucosa	stomach
20	chr11:101878600-101881600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:101878600-101881600	Weak transcription	Fetal Lung	lung
22	chr11:101878600-101882000	Weak transcription	Ovary	ovary
23	chr11:101878800-101880800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:101878800-101880800	Weak transcription	HSMM	muscle
25	chr11:101878800-101880800	Weak transcription	HUVEC	blood vessel
26	chr11:101878800-101881000	Weak transcription	Hela-S3	cervix
27	chr11:101878800-101881000	Weak transcription	NH-A	brain
28	chr11:101878800-101881400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:101878800-101881600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:101878800-101881600	Weak transcription	HepG2	liver
31	chr11:101878800-101881800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:101879000-101880800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:101879000-101880800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:101879000-101881000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:101879000-101881400	Weak transcription	Osteobl	bone
36	chr11:101879000-101881600	Enhancers	A549	lung
37	chr11:101879400-101884400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:101880400-101884600	Enhancers	Placenta Amnion	Placenta Amnion
39	chr11:101880600-101881400	Enhancers	NHEK	skin
40	chr11:101880600-101881600	Enhancers	NHDF-Ad	bronchial
41	chr11:101880600-101882400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:101880600-101882600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr11:101880600-101882600	Enhancers	HMEC	breast
44	chr11:101880600-101882600	Enhancers	NHLF	lung
45	chr11:101880600-101882800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links