Variant report

Variant	rs11225354
Chromosome Location	chr11:102510046-102510047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17098800	1.00[AFR][1000 genomes]
rs17098913	1.00[AFR][1000 genomes]
rs17098947	1.00[AFR][1000 genomes]
rs17174327	1.00[AFR][1000 genomes]
rs1940059	1.00[AFR][1000 genomes]
rs34733120	1.00[AFR][1000 genomes]
rs35089914	1.00[AFR][1000 genomes]
rs61893837	1.00[AFR][1000 genomes]
rs61893838	1.00[AFR][1000 genomes]
rs61893839	1.00[AFR][1000 genomes]
rs61893841	1.00[AFR][1000 genomes]
rs61895670	1.00[AFR][1000 genomes]
rs61895671	1.00[AFR][1000 genomes]
rs61895673	1.00[AFR][1000 genomes]
rs61895674	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102500000-102510600	Weak transcription	A549	lung
2	chr11:102502200-102510200	Weak transcription	Liver	Liver
3	chr11:102508400-102511800	Weak transcription	Pancreas	Pancrea
4	chr11:102509800-102510400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:102509800-102512200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:102510000-102510200	Enhancers	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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