Variant report

Variant	rs61893841
Chromosome Location	chr11:102462326-102462327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11225354	1.00[AFR][1000 genomes]
rs17098800	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17098913	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17098947	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17174327	1.00[AFR][1000 genomes]
rs1940059	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34733120	1.00[AFR][1000 genomes]
rs35089914	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs61893837	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61893838	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893839	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895670	1.00[AFR][1000 genomes]
rs61895671	1.00[AFR][1000 genomes]
rs61895673	1.00[AFR][1000 genomes]
rs61895674	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102451400-102462600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:102451600-102463600	Weak transcription	NHDF-Ad	bronchial
3	chr11:102459400-102462600	Enhancers	Primary B cells from peripheral blood	blood
4	chr11:102460200-102463800	Enhancers	GM12878-XiMat	blood
5	chr11:102461800-102462800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:102462200-102463800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:102462200-102464200	Enhancers	HMEC	breast
8	chr11:102462200-102470000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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