Variant report

Variant	rs61895671
Chromosome Location	chr11:102492027-102492028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11225354	1.00[AFR][1000 genomes]
rs17098800	1.00[AFR][1000 genomes]
rs17098913	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17098947	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17174327	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1940059	1.00[AFR][1000 genomes]
rs34733120	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35089914	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61893837	1.00[AFR][1000 genomes]
rs61893838	1.00[AFR][1000 genomes]
rs61893839	1.00[AFR][1000 genomes]
rs61893841	1.00[AFR][1000 genomes]
rs61895670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61895673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102485600-102492800	Weak transcription	Fetal Intestine Small	intestine
2	chr11:102487000-102494800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:102487000-102497000	Weak transcription	HSMMtube	muscle
4	chr11:102491200-102492600	Enhancers	K562	blood
5	chr11:102491200-102493600	Enhancers	HUVEC	blood vessel
6	chr11:102491400-102492200	Enhancers	Osteobl	bone
7	chr11:102491400-102492400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:102491400-102492400	Enhancers	A549	lung
9	chr11:102491400-102492400	Enhancers	GM12878-XiMat	blood
10	chr11:102491600-102492200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:102491600-102493000	Weak transcription	Fetal Intestine Large	intestine
12	chr11:102491600-102496800	Enhancers	HepG2	liver
13	chr11:102491800-102492800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:102492000-102492200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:102492000-102492400	Enhancers	HMEC	breast
16	chr11:102492000-102492400	Enhancers	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links