Variant report

Variant	rs11225417
Chromosome Location	chr11:102636542-102636543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12418360	1.00[ASW][hapmap]
rs470154	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs470209	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs470249	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs470277	1.00[CEU][hapmap];0.80[AMR][1000 genomes]
rs470329	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs470558	1.00[ASW][hapmap];0.86[MEX][hapmap]
rs491152	1.00[ASW][hapmap];0.86[MEX][hapmap]
rs547561	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102629400-102642200	Weak transcription	Stomach Mucosa	stomach
2	chr11:102635000-102638400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:102635200-102636600	Enhancers	Fetal Intestine Small	intestine
4	chr11:102635400-102636600	Enhancers	Fetal Intestine Large	intestine
5	chr11:102635400-102640800	Weak transcription	HMEC	breast
6	chr11:102635400-102647000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:102636200-102637000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:102636200-102644200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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