Variant report

Variant	rs1122664
Chromosome Location	chr6:15949746-15949747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15941449..15944936-chr6:15948598..15951419,3	K562	blood:
2	chr6:15949576..15950078-chr6:16128901..16129659,2	MCF-7	breast:
3	chr6:15943539..15950749-chr6:16127377..16131631,11	K562	blood:
4	chr6:15946829..15950495-chr6:16128387..16130943,5	MCF-7	breast:
5	chr6:15948810..15954087-chr6:16127732..16131225,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10214915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10949321	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs10949329	0.84[TSI][hapmap]
rs12204956	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1269141	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs1539422	1.00[ASW][hapmap];0.85[CEU][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2105356	0.84[EUR][1000 genomes]
rs4712267	0.84[EUR][1000 genomes]
rs6459428	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs6932531	0.89[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs6939221	0.80[EUR][1000 genomes]
rs71559648	0.94[EUR][1000 genomes]
rs9464846	0.84[EUR][1000 genomes]
rs9765919	0.92[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1122664	MYLIP	cis	cerebellum	SCAN
rs1122664	MYLIP	cis	parietal	SCAN

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15936400-15951200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15944400-15951000	Weak transcription	Gastric	stomach
3	chr6:15947200-15952600	Weak transcription	Right Atrium	heart
4	chr6:15949000-15950000	Enhancers	Stomach Mucosa	stomach
5	chr6:15949000-15951000	Enhancers	Fetal Intestine Small	intestine
6	chr6:15949200-15949800	Enhancers	NH-A	brain
7	chr6:15949200-15950400	Enhancers	Fetal Heart	heart
8	chr6:15949200-15950600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:15949200-15950600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:15949200-15950600	Enhancers	A549	lung
11	chr6:15949200-15950600	Enhancers	HUVEC	blood vessel
12	chr6:15949200-15950800	Enhancers	Duodenum Mucosa	Duodenum
13	chr6:15949200-15950800	Bivalent Enhancer	HepG2	liver
14	chr6:15949200-15951000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:15949200-15951000	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr6:15949200-15951400	Enhancers	Fetal Kidney	kidney
17	chr6:15949400-15949800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:15949400-15949800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:15949400-15949800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:15949400-15949800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:15949400-15949800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:15949400-15949800	Enhancers	Pancreas	Pancrea
23	chr6:15949400-15949800	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr6:15949400-15949800	Enhancers	Small Intestine	intestine
25	chr6:15949400-15950400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:15949400-15950600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr6:15949400-15950600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr6:15949400-15950600	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr6:15949400-15950800	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr6:15949400-15950800	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr6:15949400-15950800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:15949400-15950800	Enhancers	Fetal Intestine Large	intestine
33	chr6:15949400-15950800	Enhancers	NHEK	skin
34	chr6:15949400-15951000	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr6:15949600-15949800	Enhancers	Fetal Muscle Trunk	muscle
36	chr6:15949600-15949800	Enhancers	Psoas Muscle	Psoas
37	chr6:15949600-15949800	Enhancers	Right Ventricle	heart
38	chr6:15949600-15949800	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr6:15949600-15950200	Flanking Active TSS	K562	blood
40	chr6:15949600-15950400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:15949600-15950400	Enhancers	Fetal Brain Male	brain
42	chr6:15949600-15950600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr6:15949600-15950800	Enhancers	Fetal Muscle Leg	muscle
44	chr6:15949600-15951400	Enhancers	Placenta	Placenta
45	chr6:15949600-15952000	Weak transcription	Fetal Lung	lung

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