Variant report

Variant	rs11226744
Chromosome Location	chr11:105344885-105344886
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10502053	0.81[AFR][1000 genomes]
rs10895819	0.94[AFR][1000 genomes]
rs11226709	0.84[AFR][1000 genomes]
rs11226711	0.81[AFR][1000 genomes]
rs11226750	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827556	0.94[AFR][1000 genomes]
rs12270577	0.94[AFR][1000 genomes]
rs12276355	0.85[AFR][1000 genomes]
rs12278690	0.88[AFR][1000 genomes]
rs12284711	0.94[AFR][1000 genomes]
rs12288327	0.86[AFR][1000 genomes]
rs13377341	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1945973	0.93[AFR][1000 genomes]
rs6591130	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7947277	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv556221	chr11:105243371-105392079	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105339800-105360200	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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