Variant report
Variant | rs6591130 |
---|---|
Chromosome Location | chr11:105386143-105386144 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:7 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:105385673..105387781-chr11:105388066..105390476,3 | K562 | blood: | |
2 | chr11:105385111..105387374-chr11:105388976..105390591,2 | K562 | blood: | |
3 | chr11:105384754..105389238-chr11:105390610..105395129,6 | K562 | blood: | |
4 | chr11:105380418..105382873-chr11:105384814..105386801,3 | K562 | blood: | |
5 | chr11:105371540..105374603-chr11:105385340..105388360,3 | K562 | blood: | |
6 | chr11:105352067..105353901-chr11:105385410..105387990,2 | K562 | blood: | |
7 | chr11:105380496..105383732-chr11:105384771..105387994,4 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10502053 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs10895819 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs11226709 | 1.00[EUR][1000 genomes] |
rs11226711 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs11226719 | 1.00[EUR][1000 genomes] |
rs11226744 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11226750 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11822053 | 1.00[EUR][1000 genomes] |
rs11822345 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs11827556 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12270577 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12276355 | 1.00[EUR][1000 genomes] |
rs12278690 | 1.00[EUR][1000 genomes] |
rs12279561 | 1.00[EUR][1000 genomes] |
rs12284711 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12288327 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12291502 | 1.00[EUR][1000 genomes] |
rs13377341 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17104338 | 1.00[EUR][1000 genomes] |
rs1945973 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs60399073 | 1.00[EUR][1000 genomes] |
rs7104101 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs7943609 | 1.00[EUR][1000 genomes] |
rs7947277 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949337 | chr11:104950007-105510193 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
2 | nsv556221 | chr11:105243371-105392079 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:105385200-105387800 | Active TSS | K562 | blood |
2 | chr11:105386000-105387200 | Active TSS | Placenta | Placenta |