Variant report

Variant	rs12279561
Chromosome Location	chr11:105479684-105479685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10502053	1.00[EUR][1000 genomes]
rs10895819	1.00[EUR][1000 genomes]
rs11226719	1.00[EUR][1000 genomes]
rs11226750	1.00[EUR][1000 genomes]
rs11822345	1.00[EUR][1000 genomes]
rs11827556	1.00[EUR][1000 genomes]
rs12270577	1.00[EUR][1000 genomes]
rs12276355	1.00[EUR][1000 genomes]
rs12278690	1.00[EUR][1000 genomes]
rs12284711	1.00[EUR][1000 genomes]
rs12288327	1.00[EUR][1000 genomes]
rs13377341	1.00[EUR][1000 genomes]
rs17104338	1.00[EUR][1000 genomes]
rs1945973	1.00[EUR][1000 genomes]
rs6591130	1.00[EUR][1000 genomes]
rs7947277	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105478000-105479800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:105478000-105479800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:105478800-105479800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:105479200-105484400	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr11:105479400-105485800	Active TSS	Brain Angular Gyrus	brain
6	chr11:105479600-105479800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr11:105479600-105479800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:105479600-105479800	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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