Variant report

Variant	rs12270577
Chromosome Location	chr11:105290934-105290935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105290478..105293249-chr11:105293833..105296048,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10502053	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10895819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11226670	1.00[EUR][1000 genomes]
rs11226671	1.00[EUR][1000 genomes]
rs11226709	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11226711	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11226719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11226744	0.94[AFR][1000 genomes]
rs11226750	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11822053	1.00[EUR][1000 genomes]
rs11822345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825995	1.00[EUR][1000 genomes]
rs11827556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12271497	1.00[EUR][1000 genomes]
rs12276355	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278690	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279561	1.00[EUR][1000 genomes]
rs12284711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288327	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291146	1.00[EUR][1000 genomes]
rs12291502	1.00[EUR][1000 genomes]
rs12292454	1.00[EUR][1000 genomes]
rs13377341	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17104338	1.00[EUR][1000 genomes]
rs1945973	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36069797	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58630471	1.00[EUR][1000 genomes]
rs60399073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6591117	1.00[EUR][1000 genomes]
rs6591130	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7104101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943609	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7947277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv556221	chr11:105243371-105392079	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv556222	chr11:105279168-105299724	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105290400-105291200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:105290400-105291400	Enhancers	Dnd41	blood

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