Variant report

Variant	rs11822053
Chromosome Location	chr11:105168942-105168943
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10502053	1.00[EUR][1000 genomes]
rs10895819	1.00[EUR][1000 genomes]
rs11226670	1.00[EUR][1000 genomes]
rs11226671	1.00[EUR][1000 genomes]
rs11226709	1.00[EUR][1000 genomes]
rs11226711	1.00[EUR][1000 genomes]
rs11226719	1.00[EUR][1000 genomes]
rs11226750	1.00[EUR][1000 genomes]
rs11822345	1.00[EUR][1000 genomes]
rs11825995	1.00[EUR][1000 genomes]
rs11827556	1.00[EUR][1000 genomes]
rs12270577	1.00[EUR][1000 genomes]
rs12271497	1.00[EUR][1000 genomes]
rs12276355	1.00[EUR][1000 genomes]
rs12278690	1.00[EUR][1000 genomes]
rs12284711	1.00[EUR][1000 genomes]
rs12288327	1.00[EUR][1000 genomes]
rs12291146	1.00[EUR][1000 genomes]
rs12291502	1.00[EUR][1000 genomes]
rs12292454	1.00[EUR][1000 genomes]
rs13377341	1.00[EUR][1000 genomes]
rs1945973	1.00[EUR][1000 genomes]
rs58630471	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58640791	1.00[AMR][1000 genomes]
rs60399073	1.00[EUR][1000 genomes]
rs6591117	1.00[EUR][1000 genomes]
rs6591130	1.00[EUR][1000 genomes]
rs7104101	1.00[EUR][1000 genomes]
rs7943609	1.00[EUR][1000 genomes]
rs7947277	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1049401	chr11:105096619-105225032	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1042715	chr11:105158641-105237086	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105167600-105169600	Enhancers	NHDF-Ad	bronchial
2	chr11:105167600-105169800	Enhancers	NHEK	skin
3	chr11:105167800-105169400	Enhancers	HUVEC	blood vessel
4	chr11:105168000-105169000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:105168000-105169000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:105168000-105169000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:105168000-105169000	Weak transcription	Hela-S3	cervix
8	chr11:105168000-105169200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:105168000-105169800	Enhancers	NH-A	brain
10	chr11:105168000-105169800	Enhancers	Osteobl	bone
11	chr11:105168200-105169800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:105168400-105169000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:105168400-105169800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:105168600-105169800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:105168800-105169600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:105168800-105169600	Enhancers	NHLF	lung

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