Variant report

Variant	rs11227279
Chromosome Location	chr11:65495211-65495212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65495038..65497128-chr11:65537591..65539830,2	MCF-7	breast:
2	chr11:65493436..65495930-chr11:65657867..65659544,2	K562	blood:
3	chr11:65486247..65489385-chr11:65493532..65496912,4	MCF-7	breast:
4	chr11:65478491..65482258-chr11:65493417..65497237,3	K562	blood:
5	chr11:65494883..65497549-chr11:65540068..65542666,2	K562	blood:
6	chr11:65487520..65489937-chr11:65492095..65496093,4	MCF-7	breast:
7	chr11:65487463..65490934-chr11:65492571..65495479,8	K562	blood:
8	chr11:65478433..65481069-chr11:65493417..65495213,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000172977	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000172922	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1073602	0.83[ASN][1000 genomes]
rs1074155	0.83[ASN][1000 genomes]
rs1074156	0.83[ASN][1000 genomes]
rs10791822	0.83[ASN][1000 genomes]
rs10896025	0.82[ASN][1000 genomes]
rs10896026	0.82[ASN][1000 genomes]
rs10896028	0.83[ASN][1000 genomes]
rs10896032	0.83[ASN][1000 genomes]
rs10896033	0.85[ASN][1000 genomes]
rs10896035	0.85[ASN][1000 genomes]
rs10896037	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896038	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227251	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11227254	0.83[ASN][1000 genomes]
rs11227281	0.87[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227299	0.84[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11532071	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11537193	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11568300	0.83[ASN][1000 genomes]
rs11600918	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601509	0.83[ASN][1000 genomes]
rs11604451	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11604462	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11604568	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606947	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225620	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289836	0.83[ASN][1000 genomes]
rs12802391	0.83[ASN][1000 genomes]
rs1466462	0.83[ASN][1000 genomes]
rs2236682	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28464085	0.84[ASN][1000 genomes]
rs4014192	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4014195	0.82[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645927	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4645933	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4930312	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4930313	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4930319	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56686587	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60626743	0.83[ASN][1000 genomes]
rs61893835	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61895665	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6591185	0.83[ASN][1000 genomes]
rs6591187	0.85[ASN][1000 genomes]
rs6591188	0.84[ASN][1000 genomes]
rs7110576	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115734	0.83[ASN][1000 genomes]
rs7120713	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7123489	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7924510	0.83[ASN][1000 genomes]
rs7930301	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7947604	0.82[AMR][1000 genomes]
rs7952133	0.85[ASN][1000 genomes]
rs948493	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs948494	0.87[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9666878	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
2	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
3	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
4	nsv897758	chr11:65490756-65564035	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv983035	chr11:65494712-65529501	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65488400-65496200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:65493000-65495400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:65494200-65495400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:65494800-65495400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:65495000-65495400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links