Variant report

Variant	rs61895665
Chromosome Location	chr11:65493249-65493250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65492532..65494079-chr11:65621451..65623321,2	K562	blood:
2	chr11:65492420..65494936-chr11:65657867..65659851,2	K562	blood:
3	chr11:65487520..65489937-chr11:65492095..65496093,4	MCF-7	breast:
4	chr11:65487463..65490934-chr11:65492571..65495479,8	K562	blood:

Variant related genes	Relation type
ENSG00000175602	Chromatin interaction
ENSG00000172922	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1073602	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1074155	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1074156	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10791822	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10896025	0.93[ASN][1000 genomes]
rs10896026	0.93[ASN][1000 genomes]
rs10896028	0.94[ASN][1000 genomes]
rs10896032	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896033	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896034	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10896035	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896037	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10896038	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227251	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227254	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227279	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227281	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227299	0.83[ASN][1000 genomes]
rs11532071	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11537193	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11568300	0.94[ASN][1000 genomes]
rs11600918	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11601509	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11604568	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11606947	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12225620	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12289836	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12576766	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12802391	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1466462	0.94[ASN][1000 genomes]
rs2236682	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2306362	0.82[ASN][1000 genomes]
rs28464085	0.93[ASN][1000 genomes]
rs4014192	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4014195	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4645927	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4645933	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4930312	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4930313	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4930319	0.83[ASN][1000 genomes]
rs56686587	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60626743	0.94[ASN][1000 genomes]
rs61893835	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6591185	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6591187	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6591188	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7110576	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7115734	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7120713	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7123489	0.91[ASN][1000 genomes]
rs746429	0.87[ASN][1000 genomes]
rs7924510	0.94[ASN][1000 genomes]
rs7930301	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7947604	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7952133	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9666878	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
2	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
3	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
4	nsv897758	chr11:65490756-65564035	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65488400-65494200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:65488400-65496200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:65490600-65494000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:65492400-65494800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:65493000-65495400	Enhancers	Primary neutrophils fromperipheralblood	blood

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