Variant report

Variant	rs11227534
Chromosome Location	chr11:66336171-66336172
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr11:66335848-66336474	A549	lung:	n/a	chr11:66336123-66336132 chr11:66336121-66336130 chr11:66336122-66336129
2	USF2	chr11:66335967-66336280	GM12878	blood:	n/a	chr11:66336191-66336202
3	USF1	chr11:66335884-66336363	ECC-1	luminal epithelium:	n/a	n/a
4	MAX	chr11:66335793-66336436	A549	lung:	n/a	chr11:66336123-66336132 chr11:66336121-66336130 chr11:66336122-66336129
5	SIX5	chr11:66335867-66336457	A549	lung:	n/a	n/a
6	SIN3AK20	chr11:66336026-66336197	SK-N-SH	brain:	n/a	n/a
7	MAX	chr11:66335938-66336343	MCF-7	breast:	n/a	chr11:66336123-66336132 chr11:66336121-66336130 chr11:66336122-66336129
8	USF1	chr11:66335971-66336401	K562	blood:	n/a	n/a
9	BCL3	chr11:66335947-66336425	A549	lung:	n/a	chr11:66336015-66336028
10	MAX	chr11:66335917-66336349	H1-hESC	embryonic stem cell:	n/a	chr11:66336123-66336132 chr11:66336121-66336130 chr11:66336122-66336129
11	POLR2A	chr11:66335902-66336204	Gliobla	brain:	n/a	n/a
12	TCF12	chr11:66335926-66336343	A549	lung:	n/a	n/a
13	SIN3AK20	chr11:66336003-66336311	K562	blood:	n/a	n/a
14	MAX	chr11:66335658-66336436	A549	lung:	n/a	chr11:66336123-66336132 chr11:66336121-66336130 chr11:66336122-66336129
15	POLR2A	chr11:66335927-66336202	HUVEC	blood vessel:	n/a	n/a
16	FOS	chr11:66336114-66336429	MCF10A-Er-Src	breast:	n/a	n/a
17	POLR2A	chr11:66335776-66336358	K562	blood:	n/a	n/a
18	E2F6	chr11:66335693-66336500	K562	blood:	n/a	chr11:66336090-66336100 chr11:66336093-66336102 chr11:66336146-66336157
19	USF2	chr11:66336017-66336333	K562	blood:	n/a	chr11:66336191-66336202
20	USF1	chr11:66335883-66336398	A549	lung:	n/a	n/a
21	MXI1	chr11:66336103-66336243	GM12878	blood:	n/a	n/a
22	MYC	chr11:66335978-66336455	MCF10A-Er-Src	breast:	n/a	chr11:66336123-66336132 chr11:66336121-66336130 chr11:66336122-66336129
23	MXI1	chr11:66335979-66336275	K562	blood:	n/a	n/a
24	MAX	chr11:66335821-66336475	SK-N-SH	brain:	n/a	chr11:66336123-66336132 chr11:66336121-66336130 chr11:66336122-66336129
25	TBP	chr11:66336037-66336259	K562	blood:	n/a	n/a
26	USF1	chr11:66335924-66336328	A549	lung:	n/a	n/a
27	SIN3AK20	chr11:66336000-66336328	A549	lung:	n/a	n/a
28	POLR2A	chr11:66335804-66336212	MCF-7	breast:	n/a	n/a
29	THAP1	chr11:66335873-66336214	K562	blood:	n/a	n/a
30	CCNT2	chr11:66335721-66336260	K562	blood:	n/a	n/a
31	ZBTB33	chr11:66336037-66336303	A549	lung:	n/a	n/a
32	SIN3AK20	chr11:66335815-66336289	PANC-1	pancreas:	n/a	n/a
33	POLR2A	chr11:66335946-66336369	PANC-1	pancreas:	n/a	n/a
34	ZBTB7A	chr11:66335652-66336185	K562	blood:	n/a	n/a
35	ZBTB7A	chr11:66335685-66336254	ECC-1	luminal epithelium:	n/a	n/a
36	MYC	chr11:66336024-66336180	MCF-7	breast:	n/a	chr11:66336123-66336132 chr11:66336121-66336130 chr11:66336122-66336129
37	MYC	chr11:66336138-66336186	Hela-S3	cervix:	n/a	n/a
38	MYC	chr11:66335938-66336373	K562	blood:	n/a	chr11:66336123-66336132 chr11:66336121-66336130 chr11:66336122-66336129
39	USF1	chr11:66335877-66336429	A549	lung:	n/a	n/a
40	NRF1	chr11:66335777-66336357	SK-N-SH	brain:	n/a	chr11:66336094-66336103 chr11:66336092-66336103 chr11:66336089-66336103 chr11:66336092-66336103
41	HMGN3	chr11:66335471-66336214	K562	blood:	n/a	n/a
42	TBL1XR1	chr11:66336073-66336325	K562	blood:	n/a	n/a
43	MAX	chr11:66335733-66336452	ECC-1	luminal epithelium:	n/a	chr11:66336123-66336132 chr11:66336121-66336130 chr11:66336122-66336129
44	USF2	chr11:66336051-66336344	Hela-S3	cervix:	n/a	chr11:66336191-66336202
45	MAX	chr11:66335726-66336494	K562	blood:	n/a	chr11:66336123-66336132 chr11:66336121-66336130 chr11:66336122-66336129
46	USF1	chr11:66335978-66336201	GM12878	blood:	n/a	n/a
47	HEY1	chr11:66335900-66336175	K562	blood:	n/a	chr11:66336021-66336036 chr11:66336121-66336130
48	MAX	chr11:66335820-66336438	MCF-7	breast:	n/a	chr11:66336123-66336132 chr11:66336121-66336130 chr11:66336122-66336129
49	POLR2A	chr11:66335839-66336433	SK-N-MC	brain:	n/a	n/a
50	BHLHE40	chr11:66336004-66336301	A549	lung:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:66336150-66336200	GM06990	blood:	n/a
2	chr11:66336150-66336200	K562	blood:	n/a
3	chr11:66336125-66336175	NH-A	brain:	n/a
4	chr11:66336125-66336175	Jurkat	blood:	n/a
5	chr11:66336125-66336175	HRCEpiC	kidney:	n/a
6	chr11:66336150-66336200	HIPEpiC	eye:	n/a
7	chr11:66336125-66336175	U87	brain:	n/a
8	chr11:66336150-66336200	ovcar-3	ovarian:	n/a
9	chr11:66336125-66336175	SK-N-SH_RA	brain:	n/a
10	chr11:66336125-66336175	HIPEpiC	eye:	n/a
11	chr11:66336132-66336182	HAEpiC	amniotic membrane:	n/a
12	chr11:66336150-66336200	SAEC	small airway:	n/a
13	chr11:66336125-66336175	SKMC	muscle:	n/a
14	chr11:66336132-66336182	ProgFib	skin:	n/a
15	chr11:66336150-66336200	NHBE	bronchial:	n/a
16	chr11:66336150-66336200	T-47D	breast:	n/a
17	chr11:66336132-66336182	H1-hESC	embryonic stem cell:	embryo
18	chr11:66336132-66336182	AG04449	skin:	fetal
19	chr11:66336150-66336200	HAEpiC	amniotic membrane:	n/a
20	chr11:66336150-66336200	HCT-116	colon:	n/a
21	chr11:66336150-66336200	U87	brain:	n/a
22	chr11:66336150-66336200	HUVEC	blood vessel:	n/a
23	chr11:66336150-66336200	AG10803	skin:	n/a
24	chr11:66336132-66336182	SAEC	small airway:	n/a
25	chr11:66336150-66336200	HNPCEpiC	eye:	n/a
26	chr11:66336125-66336175	Hela-S3	cervix:	n/a
27	chr11:66336132-66336182	HL-60	blood:	n/a
28	chr11:66336132-66336182	SKMC	muscle:	n/a
29	chr11:66336125-66336175	ECC-1	luminal epithelium:	n/a
30	chr11:66336150-66336200	A549	lung:	n/a
31	chr11:66336125-66336175	HCPEpiC	choroid plexus:	n/a
32	chr11:66336150-66336200	HEEpiC	esophagus:	n/a
33	chr11:66336132-66336182	HEEpiC	esophagus:	n/a
34	chr11:66336150-66336200	PFSK-1	brain:	n/a
35	chr11:66336150-66336200	NH-A	brain:	n/a
36	chr11:66336125-66336175	HRPEpiC	eye:	n/a
37	chr11:66336132-66336182	HRPEpiC	eye:	n/a
38	chr11:66336150-66336200	HRPEpiC	eye:	n/a
39	chr11:66336150-66336200	CMK	blood:	n/a
40	chr11:66336125-66336175	HCM	heart:	n/a
41	chr11:66336132-66336182	PANC-1	pancreas:	n/a
42	chr11:66336125-66336175	PrEC	prostate:	n/a
43	chr11:66336125-66336175	AG10803	skin:	n/a
44	chr11:66336125-66336175	GM12892	blood:	n/a
45	chr11:66336125-66336175	T-47D	breast:	n/a
46	chr11:66336132-66336182	K562	blood:	n/a
47	chr11:66336150-66336200	AG09309	skin:	n/a
48	chr11:66336132-66336182	Hepatocyte	liver:	n/a
49	chr11:66336150-66336200	ECC-1	luminal epithelium:	n/a
50	chr11:66336125-66336175	HPAEpiC	pulmonary alveolar:	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:66333517..66336306-chr11:66404884..66407774,3	K562	blood:
2	chr11:66333502..66336819-chr11:66382812..66384536,3	K562	blood:
3	chr11:66334662..66337726-chr11:66444588..66447609,3	K562	blood:
4	chr11:66311475..66316022-chr11:66335981..66338223,4	MCF-7	breast:
5	chr11:66333513..66337489-chr11:66382854..66385992,4	MCF-7	breast:
6	chr11:66333833..66336382-chr11:66443152..66446114,2	MCF-7	breast:

Variant related genes	Relation type
CTSF	TF binding region
CTSF	CpG island
ENSG00000173933	Chromatin interaction
ENSG00000174165	Chromatin interaction
ENSG00000248643	Chromatin interaction
ENSG00000248746	Chromatin interaction
ENSG00000239306	Chromatin interaction
ENSG00000173914	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10501397	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896124	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10896125	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10896129	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11227495	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227497	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227498	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227499	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227500	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227501	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227502	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227503	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227509	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11227510	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11227511	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11227512	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11227514	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11227515	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11227522	0.88[EUR][1000 genomes]
rs11227523	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11227525	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11227527	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11550299	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11821155	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11822028	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11822099	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11824771	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12099041	0.90[EUR][1000 genomes]
rs12221821	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12223479	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12223908	0.81[AFR][1000 genomes]
rs12272545	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17065	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17147644	0.95[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17495838	1.00[CEU][hapmap]
rs17496250	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17496586	0.95[EUR][1000 genomes]
rs17580784	0.84[EUR][1000 genomes]
rs2075792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276406	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2277302	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes]
rs2279864	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2279865	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs2298806	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2305532	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2305533	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2305534	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2305535	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28414721	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3179961	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35733139	0.87[EUR][1000 genomes]
rs3737525	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs3741360	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3816492	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs3819247	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3825065	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3892818	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes]
rs4542420	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4630309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4930182	0.84[EUR][1000 genomes]
rs4930183	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4930377	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4930378	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4930379	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4930380	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs506028	0.94[JPT][hapmap]
rs56144989	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57045447	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57207756	0.95[EUR][1000 genomes]
rs57288351	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57596493	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57634456	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57691879	0.90[EUR][1000 genomes]
rs57724777	0.90[EUR][1000 genomes]
rs59829960	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59982644	0.98[EUR][1000 genomes]
rs60358007	0.87[EUR][1000 genomes]
rs60645853	0.98[EUR][1000 genomes]
rs61561111	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61582507	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7104378	0.84[EUR][1000 genomes]
rs7116921	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7116940	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7123176	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7928882	0.87[EUR][1000 genomes]
rs7939759	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7943327	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7950407	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7950790	0.84[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
2	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv522277	chr11:66234023-66493825	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	nsv897787	chr11:66300348-66347850	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv897788	chr11:66319262-66347850	Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	esv3376183	chr11:66334601-66337149	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11227534	CTD-3074O7.5	cis	Esophagus Mucosa	GTEx
rs11227534	CCS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66319000-66337800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:66329400-66336600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr11:66330400-66337800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:66330600-66336800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:66331200-66336600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:66331400-66337800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:66331600-66337800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:66332000-66336600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:66334800-66336400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:66335000-66336200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:66335000-66336200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:66335000-66336600	Flanking Active TSS	Stomach Smooth Muscle	stomach
13	chr11:66335200-66336200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:66335200-66336200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:66335200-66336200	Active TSS	Colon Smooth Muscle	Colon
16	chr11:66335200-66336400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr11:66335200-66336400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:66335200-66336400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:66335200-66336600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
20	chr11:66335400-66336200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:66335400-66336200	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr11:66335400-66336200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:66335400-66336200	Active TSS	Brain Cingulate Gyrus	brain
24	chr11:66335400-66336200	Active TSS	Brain Hippocampus Middle	brain
25	chr11:66335400-66336200	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr11:66335400-66336200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:66335400-66336200	Flanking Active TSS	Colonic Mucosa	Colon
28	chr11:66335400-66336200	Active TSS	A549	lung
29	chr11:66335400-66336200	Active TSS	HSMM	muscle
30	chr11:66335400-66336200	Active TSS	HSMMtube	muscle
31	chr11:66335400-66336200	Active TSS	Osteobl	bone
32	chr11:66335400-66336400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
33	chr11:66335400-66336400	Flanking Active TSS	Primary B cells from peripheral blood	blood
34	chr11:66335400-66336400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:66335400-66336400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:66335400-66336400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:66335400-66336400	Flanking Active TSS	Liver	Liver
38	chr11:66335400-66336400	Flanking Active TSS	Fetal Muscle Trunk	muscle
39	chr11:66335400-66336400	Active TSS	Hela-S3	cervix
40	chr11:66335400-66336400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
41	chr11:66335400-66336400	Flanking Active TSS	NH-A	brain
42	chr11:66335600-66336200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:66335600-66336200	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr11:66335600-66336200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
45	chr11:66335600-66336200	Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr11:66335600-66336200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:66335600-66336200	Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr11:66335600-66336200	Active TSS	Aorta	Aorta
49	chr11:66335600-66336200	Active TSS	Brain Angular Gyrus	brain
50	chr11:66335600-66336200	Active TSS	Brain Anterior Caudate	brain

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