Variant report

Variant	rs3179961
Chromosome Location	chr11:66244454-66244455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:48)
CpG islands
(count:61)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:48 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr11:66244402-66244635	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr11:66244337-66244741	A549	lung:	n/a	n/a
3	POLR2A	chr11:66243673-66244775	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr11:66243814-66245693	PFSK-1	brain:	n/a	n/a
5	MAX	chr11:66244334-66244769	H1-hESC	embryonic stem cell:	n/a	n/a
6	MXI1	chr11:66244410-66244636	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr11:66243330-66245612	Hela-S3	cervix:	n/a	n/a
8	POLR2A	chr11:66244403-66244872	HUVEC	blood vessel:	n/a	n/a
9	POLR2A	chr11:66244021-66244800	K562	blood:	n/a	n/a
10	POLR2A	chr11:66243520-66248581	SK-N-MC	brain:	n/a	n/a
11	USF1	chr11:66244450-66244741	H1-hESC	embryonic stem cell:	n/a	chr11:66244605-66244616
12	POLR2A	chr11:66244283-66244607	ProgFib	skin:	n/a	n/a
13	POLR2A	chr11:66243706-66248342	MCF-7	breast:	n/a	n/a
14	ZNF263	chr11:66244419-66244849	HEK293-T-REx	kidney:	n/a	chr11:66244586-66244607
15	USF1	chr11:66244453-66244706	HepG2	liver:	n/a	chr11:66244605-66244616
16	POLR2A	chr11:66244089-66244875	H1-hESC	embryonic stem cell:	n/a	n/a
17	USF1	chr11:66244385-66244750	A549	lung:	n/a	chr11:66244605-66244616
18	POLR2A	chr11:66242460-66244951	PANC-1	pancreas:	n/a	n/a
19	POLR2A	chr11:66243959-66244685	HCT-116	colon:	n/a	n/a
20	POLR2A	chr11:66244369-66244643	HepG2	liver:	n/a	n/a
21	USF1	chr11:66244425-66244742	A549	lung:	n/a	chr11:66244605-66244616
22	POLR2A	chr11:66244310-66244765	ECC-1	luminal epithelium:	n/a	n/a
23	POLR2A	chr11:66243831-66245023	HepG2	liver:	n/a	n/a
24	POLR2A	chr11:66244239-66244608	U87	brain:	n/a	n/a
25	POLR2A	chr11:66244265-66244608	U87	brain:	n/a	n/a
26	POLR2A	chr11:66244426-66244735	H1-hESC	embryonic stem cell:	n/a	n/a
27	POLR2A	chr11:66244069-66245123	SK-N-SH	brain:	n/a	n/a
28	POLR2A	chr11:66243723-66244730	Raji	blood:	n/a	n/a
29	USF1	chr11:66244410-66244767	SK-N-SH_RA	brain:	n/a	chr11:66244605-66244616
30	SP1	chr11:66244396-66244710	H1-hESC	embryonic stem cell:	n/a	chr11:66244486-66244497
31	POLR2A	chr11:66244215-66245216	HUVEC	blood vessel:	n/a	n/a
32	POLR2A	chr11:66243528-66248662	PANC-1	pancreas:	n/a	n/a
33	USF1	chr11:66244405-66244776	A549	lung:	n/a	chr11:66244605-66244616
34	POLR2A	chr11:66244274-66245106	K562	blood:	n/a	n/a
35	POLR2A	chr11:66244442-66244592	A549	lung:	n/a	n/a
36	POLR2A	chr11:66243316-66244661	HL-60	blood:	n/a	n/a
37	BCL3	chr11:66244431-66244848	A549	lung:	n/a	n/a
38	POLR2A	chr11:66243707-66248130	K562	blood:	n/a	n/a
39	USF1	chr11:66244368-66244830	ECC-1	luminal epithelium:	n/a	chr11:66244605-66244616
40	POLR2A	chr11:66244346-66244677	GM12878	blood:	n/a	n/a
41	POLR2A	chr11:66243932-66245705	HCT-116	colon:	n/a	n/a
42	USF1	chr11:66244327-66244795	H1-hESC	embryonic stem cell:	n/a	chr11:66244605-66244616
43	POLR2A	chr11:66242800-66244800	A549	lung:	n/a	n/a
44	SP1	chr11:66244267-66244766	H1-hESC	embryonic stem cell:	n/a	chr11:66244486-66244497
45	USF1	chr11:66244432-66244735	K562	blood:	n/a	chr11:66244605-66244616
46	POLR2A	chr11:66244314-66244463	MCF10A-Er-Src	breast:	n/a	n/a
47	SIN3A	chr11:66244351-66244590	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr11:66244393-66244786	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:66244423-66244473	RPTEC	kidney:	n/a
2	chr11:66244423-66244473	GM12878	blood:	n/a
3	chr11:66244423-66244473	CMK	blood:	n/a
4	chr11:66244423-66244473	K562	blood:	n/a
5	chr11:66244423-66244473	SK-N-SH	brain:	n/a
6	chr11:66244423-66244473	HMEC	breast:	n/a
7	chr11:66244423-66244473	HPAEpiC	pulmonary alveolar:	n/a
8	chr11:66244423-66244473	SK-N-MC	brain:	n/a
9	chr11:66244423-66244473	MCF-7	breast:	n/a
10	chr11:66244423-66244473	A549	lung:	n/a
11	chr11:66244423-66244473	AG09319	gingival:	n/a
12	chr11:66244423-66244473	HCM	heart:	n/a
13	chr11:66244423-66244473	GM12891	blood:	n/a
14	chr11:66244423-66244473	NT2-D1	testis:	n/a
15	chr11:66244423-66244473	AG04449	skin:	fetal
16	chr11:66244423-66244473	Hepatocyte	liver:	n/a
17	chr11:66244423-66244473	U87	brain:	n/a
18	chr11:66244423-66244473	HL-60	blood:	n/a
19	chr11:66244423-66244473	GM12892	blood:	n/a
20	chr11:66244423-66244473	T-47D	breast:	n/a
21	chr11:66244423-66244473	PANC-1	pancreas:	n/a
22	chr11:66244423-66244473	HCPEpiC	choroid plexus:	n/a
23	chr11:66244423-66244473	SK-N-SH_RA	brain:	n/a
24	chr11:66244423-66244473	IMR90	lung:	fetal
25	chr11:66244423-66244473	ECC-1	luminal epithelium:	n/a
26	chr11:66244423-66244473	GM06990	blood:	n/a
27	chr11:66244423-66244473	BE2_C	brain:	n/a
28	chr11:66244423-66244473	ProgFib	skin:	n/a
29	chr11:66244423-66244473	NB4	blood:	n/a
30	chr11:66244423-66244473	HRPEpiC	eye:	n/a
31	chr11:66244423-66244473	AG04450	lung:	fetal
32	chr11:66244423-66244473	AG10803	skin:	n/a
33	chr11:66244423-66244473	SAEC	small airway:	n/a
34	chr11:66244423-66244473	HepG2	liver:	n/a
35	chr11:66244423-66244473	PrEC	prostate:	n/a
36	chr11:66244423-66244473	GM19239	blood:	n/a
37	chr11:66244423-66244473	HNPCEpiC	eye:	n/a
38	chr11:66244423-66244473	SKMC	muscle:	n/a
39	chr11:66244423-66244473	NHDF-neo	bronchial:	n/a
40	chr11:66244423-66244473	ovcar-3	ovarian:	n/a
41	chr11:66244423-66244473	HIPEpiC	eye:	n/a
42	chr11:66244423-66244473	LNCaP	prostate:	n/a
43	chr11:66244423-66244473	NH-A	brain:	n/a
44	chr11:66244423-66244473	Hela-S3	cervix:	n/a
45	chr11:66244423-66244473	Caco-2	colon:	n/a
46	chr11:66244423-66244473	PFSK-1	brain:	n/a
47	chr11:66244423-66244473	AG09309	skin:	n/a
48	chr11:66244423-66244473	AoSMC	blood vessel:	n/a
49	chr11:66244423-66244473	HCF	heart:	n/a
50	chr11:66244423-66244473	H1-hESC	embryonic stem cell:	embryo

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66243721..66249369-chr11:66258892..66263387,7	MCF-7	breast:
2	chr11:66176296..66179598-chr11:66242738..66246499,3	MCF-7	breast:
3	chr11:66177507..66179635-chr11:66243431..66245683,2	MCF-7	breast:
4	chr11:66176391..66179593-chr11:66244055..66247322,3	K562	blood:
5	chr11:66244175..66248389-chr11:66381997..66386853,5	MCF-7	breast:
6	chr11:66243353..66245736-chr11:66254515..66256675,2	MCF-7	breast:
7	chr11:66204459..66208139-chr11:66244186..66247891,5	MCF-7	breast:
8	chr11:66175973..66176956-chr11:66243766..66244626,3	MCF-7	breast:

No data

Variant related genes	Relation type
DPP3	TF binding region
ENSG00000255517	TF binding region
ENSG00000255517	CpG island
DPP3	CpG island
ENSG00000254510	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000254986	Chromatin interaction
ENSG00000239306	Chromatin interaction
ENSG00000248643	Chromatin interaction
ENSG00000199325	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10501397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896124	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896129	0.89[EUR][1000 genomes]
rs11227495	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227497	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227498	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227500	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227502	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227503	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227509	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227514	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227522	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11227523	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227525	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227527	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11227534	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11550299	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11821155	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822028	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11822099	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11824771	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12099041	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12221821	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12223479	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12272545	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17065	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17147644	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17495838	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs17496250	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17496586	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17580784	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2075792	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2276406	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2277302	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279864	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2298806	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2305532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2305533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2305534	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2305535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28414721	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35733139	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3737525	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3741360	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3816492	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3819247	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3825065	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3867131	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3892818	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4542420	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4576	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4630309	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4930182	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4930183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4930377	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4930378	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4930379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4930380	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs519380	0.93[MEX][hapmap]
rs56144989	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57045447	0.89[EUR][1000 genomes]
rs57207756	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57288351	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57596493	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57634456	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57691879	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57724777	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59829960	0.89[EUR][1000 genomes]
rs59982644	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60358007	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60645853	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61561111	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61582507	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104378	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7116921	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7116940	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7123176	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7928882	0.90[GIH][hapmap];0.86[MEX][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7939759	0.89[EUR][1000 genomes]
rs7943327	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7950407	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7950790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
2	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
3	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv832193	chr11:66120339-66278805	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
6	nsv468601	chr11:66234023-66296114	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	nsv555224	chr11:66234023-66296114	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
8	nsv522277	chr11:66234023-66493825	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs3179961	CCND1	cis	parietal	SCAN
rs3179961	CCS	cis	lymphoblastoid	seeQTL
rs3179961	CCS	cis	multi-tissue	Pritchard
rs3179961	DPP3	cis	Thyroid	GTEx
rs3179961	ASRGL1	cis	parietal	SCAN
rs3179961	RBM4	cis	cerebellum	SCAN
rs3179961	CCS	Cis_1M	lymphoblastoid	RTeQTL
rs3179961	C11orf80	cis	cerebellum	SCAN
rs3179961	CHKA	cis	cerebellum	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66235200-66245000	Weak transcription	HSMM	muscle
2	chr11:66235200-66246200	Weak transcription	Fetal Kidney	kidney
3	chr11:66235400-66246400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:66235400-66246600	Weak transcription	Fetal Heart	heart
5	chr11:66235400-66246600	Weak transcription	Psoas Muscle	Psoas
6	chr11:66235400-66246600	Weak transcription	HSMMtube	muscle
7	chr11:66235600-66246400	Weak transcription	A549	lung
8	chr11:66235600-66246400	Weak transcription	Hela-S3	cervix
9	chr11:66235800-66245000	Weak transcription	Thymus	Thymus
10	chr11:66235800-66246200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr11:66235800-66246200	Weak transcription	Fetal Thymus	thymus
12	chr11:66235800-66246400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:66235800-66246400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:66235800-66246600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:66235800-66246600	Weak transcription	Primary B cells from cord blood	blood
16	chr11:66235800-66246600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:66235800-66246600	Weak transcription	Stomach Mucosa	stomach
18	chr11:66236000-66246200	Weak transcription	HepG2	liver
19	chr11:66236000-66246400	Weak transcription	Fetal Brain Male	brain
20	chr11:66236000-66246600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:66236000-66246600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:66236000-66246600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:66236000-66246600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:66236200-66245600	Strong transcription	Fetal Stomach	stomach
25	chr11:66236200-66246200	Weak transcription	Dnd41	blood
26	chr11:66236200-66246400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr11:66236400-66244600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:66236400-66245800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:66236600-66245600	Strong transcription	Stomach Smooth Muscle	stomach
30	chr11:66237600-66245800	Strong transcription	Fetal Intestine Small	intestine
31	chr11:66237600-66246400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:66237800-66244600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:66237800-66245200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:66238000-66245400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:66238000-66245400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:66238000-66246200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr11:66238400-66245000	Strong transcription	Colon Smooth Muscle	Colon
38	chr11:66238400-66245400	Strong transcription	Fetal Brain Female	brain
39	chr11:66238400-66245800	Strong transcription	Spleen	Spleen
40	chr11:66238600-66245400	Strong transcription	NHLF	lung
41	chr11:66238800-66245600	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:66240200-66246600	Weak transcription	Brain Angular Gyrus	brain
43	chr11:66240400-66246000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:66240400-66246600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:66240400-66246600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:66241000-66246200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:66241000-66246200	Weak transcription	Fetal Intestine Large	intestine
48	chr11:66241000-66246400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:66241200-66245400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:66241400-66246200	Weak transcription	Brain Substantia Nigra	brain

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