Variant report

Variant	rs11821155
Chromosome Location	chr11:66246337-66246338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr11:66246132-66248652	GM12878	blood:	n/a	n/a
2	TEAD4	chr11:66246114-66247293	K562	blood:	n/a	n/a
3	RAD21	chr11:66246184-66246863	H1-hESC	embryonic stem cell:	n/a	chr11:66246573-66246586 chr11:66246570-66246589 chr11:66246574-66246588 chr11:66246587-66246599 chr11:66246574-66246584
4	BCL3	chr11:66245908-66248550	A549	lung:	n/a	chr11:66247900-66247909 chr11:66247719-66247732 chr11:66248228-66248237 chr11:66247761-66247774
5	RAD21	chr11:66246222-66246848	HCT-116	colon:	n/a	chr11:66246573-66246586 chr11:66246570-66246589 chr11:66246574-66246588 chr11:66246587-66246599 chr11:66246574-66246584
6	CBX3	chr11:66246305-66246712	K562	blood:	n/a	n/a
7	KAP1	chr11:66246147-66248106	HEK293	kidney:	n/a	n/a
8	PML	chr11:66246143-66246793	GM12878	blood:	n/a	n/a
9	MAX	chr11:66246330-66248565	A549	lung:	n/a	chr11:66248151-66248161
10	RCOR1	chr11:66245859-66248698	IMR90	lung:	n/a	n/a
11	POLR2A	chr11:66245718-66248327	PFSK-1	brain:	n/a	n/a
12	POLR2A	chr11:66246001-66248451	PBDE	blood:	n/a	n/a
13	POLR2A	chr11:66245145-66248294	HepG2	liver:	n/a	n/a
14	POLR2A	chr11:66245951-66248460	GM12878	blood:	n/a	n/a
15	CBX3	chr11:66246224-66246856	K562	blood:	n/a	n/a
16	FOXM1	chr11:66246176-66246767	GM12878	blood:	n/a	n/a
17	POLR2A	chr11:66246026-66248268	Hela-S3	cervix:	n/a	n/a
18	ATF2	chr11:66246169-66247029	H1-hESC	embryonic stem cell:	n/a	n/a
19	RAD21	chr11:66246278-66246806	A549	lung:	n/a	chr11:66246573-66246586 chr11:66246570-66246589 chr11:66246574-66246588 chr11:66246587-66246599 chr11:66246574-66246584
20	ZNF143	chr11:66246239-66246846	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr11:66243520-66248581	SK-N-MC	brain:	n/a	n/a
22	POLR2A	chr11:66245327-66248437	SK-N-SH	brain:	n/a	n/a
23	POLR2A	chr11:66246188-66248302	GM12878	blood:	n/a	n/a
24	POLR2A	chr11:66245084-66248443	U87	brain:	n/a	n/a
25	CTCF	chr11:66246323-66246790	K562	blood:	n/a	chr11:66246572-66246590 chr11:66246574-66246587 chr11:66246578-66246587 chr11:66246567-66246588
26	POLR2A	chr11:66246078-66248449	HepG2	liver:	n/a	n/a
27	MAZ	chr11:66246311-66248702	IMR90	lung:	n/a	chr11:66248151-66248161
28	REST	chr11:66246285-66246886	HL-60	blood:	n/a	n/a
29	POLR2A	chr11:66243706-66248342	MCF-7	breast:	n/a	n/a
30	POLR2A	chr11:66246306-66248473	HCT-116	colon:	n/a	n/a
31	RCOR1	chr11:66246245-66246779	K562	blood:	n/a	n/a
32	POLR2A	chr11:66246278-66246534	HUVEC	blood vessel:	n/a	n/a
33	ATF2	chr11:66246176-66246874	H1-hESC	embryonic stem cell:	n/a	n/a
34	TCF12	chr11:66246147-66248535	A549	lung:	n/a	n/a
35	MXI1	chr11:66246005-66248766	IMR90	lung:	n/a	n/a
36	REST	chr11:66246289-66246823	A549	lung:	n/a	n/a
37	CTCF	chr11:66246262-66246348	GM19238	blood:	n/a	n/a
38	POLR2A	chr11:66246056-66246404	HCT-116	colon:	n/a	n/a
39	CTCF	chr11:66246152-66248725	SK-N-SH	brain:	n/a	chr11:66246572-66246590 chr11:66246574-66246587 chr11:66246578-66246587 chr11:66246567-66246588 chr11:66247755-66247768
40	MTA3	chr11:66246254-66246952	GM12878	blood:	n/a	n/a
41	BCL3	chr11:66246145-66248653	A549	lung:	n/a	chr11:66247900-66247909 chr11:66247719-66247732 chr11:66248228-66248237 chr11:66247761-66247774
42	POLR2A	chr11:66245474-66248413	K562	blood:	n/a	n/a
43	RAD21	chr11:66246287-66246832	HepG2	liver:	n/a	chr11:66246573-66246586 chr11:66246570-66246589 chr11:66246574-66246588 chr11:66246587-66246599 chr11:66246574-66246584
44	POLR2A	chr11:66245108-66248443	U87	brain:	n/a	n/a
45	POLR2A	chr11:66246262-66246376	H1-hESC	embryonic stem cell:	n/a	n/a
46	RCOR1	chr11:66246306-66248453	Hela-S3	cervix:	n/a	n/a
47	CTCF	chr11:66246045-66247356	HCT-116	colon:	n/a	chr11:66246572-66246590 chr11:66246574-66246587 chr11:66246578-66246587 chr11:66246567-66246588
48	ZNF143	chr11:66246235-66246781	K562	blood:	n/a	n/a
49	POLR2A	chr11:66246229-66248521	PANC-1	pancreas:	n/a	n/a
50	PBX3	chr11:66246214-66248515	SK-N-SH	brain:	n/a	chr11:66247146-66247166 chr11:66247806-66247826

No.	Distal block	Cell Line	Cell type
1	chr11:66206171..66206992-chr11:66246238..66247018,2	MCF-7	breast:
2	chr11:66172930..66174467-chr11:66245243..66247350,2	K562	blood:
3	chr11:66174002..66176037-chr11:66244624..66246480,2	MCF-7	breast:
4	chr11:66215751..66217886-chr11:66244738..66246507,2	K562	blood:
5	chr11:66245214..66247869-chr20:57470356..57473154,2	K562	blood:
6	chr11:66245898..66247692-chr11:66270786..66272292,2	MCF-7	breast:
7	chr11:66243721..66249369-chr11:66258892..66263387,7	MCF-7	breast:
8	chr11:66244873..66247008-chr11:66305651..66307290,2	K562	blood:
9	chr11:66176296..66179598-chr11:66242738..66246499,3	MCF-7	breast:
10	chr11:66204242..66206577-chr11:66245912..66248466,3	MCF-7	breast:
11	chr11:66245337..66248539-chr11:66443366..66447095,4	MCF-7	breast:
12	chr11:66176391..66179593-chr11:66244055..66247322,3	K562	blood:
13	chr11:66244175..66248389-chr11:66381997..66386853,5	MCF-7	breast:
14	chr11:66199319..66202048-chr11:66246044..66248401,2	MCF-7	breast:
15	chr11:66246010..66248115-chr21:9824220..9827166,2	MCF-7	breast:
16	chr11:66244850..66249884-chr11:66274125..66278778,6	MCF-7	breast:
17	chr11:66175572..66176782-chr11:66246086..66247068,8	K562	blood:
18	chr11:66246144..66249538-chr11:66312277..66316497,5	MCF-7	breast:
19	chr11:66206396..66207155-chr11:66246290..66246907,2	MCF-7	breast:
20	chr11:66204459..66208139-chr11:66244186..66247891,5	MCF-7	breast:
21	chr11:66183845..66188748-chr11:66244741..66247932,5	MCF-7	breast:
22	chr11:66175540..66176515-chr11:66246071..66247001,9	MCF-7	breast:
23	chr11:66246184..66249203-chr11:66383546..66385423,4	K562	blood:
24	chr11:66175946..66178663-chr11:66245836..66248085,2	MCF-7	breast:
25	chr11:66245983..66252638-chr11:66253022..66262739,17	MCF-7	breast:

Variant related genes	Relation type
DPP3	TF binding region
ENSG00000255517	TF binding region
ENSG00000248643	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000201733	Chromatin interaction
ENSG00000239306	Chromatin interaction
ENSG00000174483	Chromatin interaction
ENSG00000174165	Chromatin interaction
ENSG00000248746	Chromatin interaction
ENSG00000254510	Chromatin interaction
ENSG00000264063	Chromatin interaction
ENSG00000264462	Chromatin interaction
ENSG00000173914	Chromatin interaction
ENSG00000254986	Chromatin interaction
ENSG00000199325	Chromatin interaction
ENSG00000256349	Chromatin interaction
ENSG00000174576	Chromatin interaction
ENSG00000087460	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10501397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896124	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896129	0.90[EUR][1000 genomes]
rs11227495	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227497	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227498	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227500	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227502	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227503	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227509	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227514	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227522	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11227523	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227525	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227527	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11227534	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11550299	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11822028	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11822099	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11824771	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12099041	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12221821	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12223479	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12272545	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17065	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17147644	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17495838	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs17496250	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17496586	0.89[EUR][1000 genomes]
rs17580784	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2075792	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2276406	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2277302	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279864	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279865	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2298806	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2305532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2305533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2305534	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2305535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28414721	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3179961	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35733139	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3737525	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3741360	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3816492	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3819247	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3825065	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3867131	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3892818	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4542420	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4576	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4630309	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4930182	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4930183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4930377	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4930378	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4930379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4930380	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs519380	0.93[MEX][hapmap]
rs56144989	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57045447	0.90[EUR][1000 genomes]
rs57207756	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57288351	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57596493	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57634456	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57691879	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57724777	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59829960	0.90[EUR][1000 genomes]
rs59982644	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60358007	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60645853	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61561111	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61582507	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104378	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7116921	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7116940	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7123176	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7928882	0.90[GIH][hapmap];0.86[MEX][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7939759	0.90[EUR][1000 genomes]
rs7943327	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7950407	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7950790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
2	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
3	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv832193	chr11:66120339-66278805	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
6	nsv468601	chr11:66234023-66296114	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	nsv555224	chr11:66234023-66296114	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
8	nsv522277	chr11:66234023-66493825	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs11821155	C11orf80	cis	cerebellum	SCAN
rs11821155	CHKA	cis	cerebellum	SCAN
rs11821155	CCS	Cis_1M	lymphoblastoid	RTeQTL
rs11821155	CTD-3074O7.5	cis	Esophagus Mucosa	GTEx
rs11821155	CCS	cis	multi-tissue	Pritchard
rs11821155	RBM4	cis	cerebellum	SCAN
rs11821155	CTD-3074O7.5	cis	Whole Blood	GTEx
rs11821155	ASRGL1	cis	parietal	SCAN
rs11821155	DPP3	cis	Thyroid	GTEx
rs11821155	CCND1	cis	parietal	SCAN

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66235400-66246400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr11:66235400-66246600	Weak transcription	Fetal Heart	heart
3	chr11:66235400-66246600	Weak transcription	Psoas Muscle	Psoas
4	chr11:66235400-66246600	Weak transcription	HSMMtube	muscle
5	chr11:66235600-66246400	Weak transcription	A549	lung
6	chr11:66235600-66246400	Weak transcription	Hela-S3	cervix
7	chr11:66235800-66246400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:66235800-66246400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:66235800-66246600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:66235800-66246600	Weak transcription	Primary B cells from cord blood	blood
11	chr11:66235800-66246600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:66235800-66246600	Weak transcription	Stomach Mucosa	stomach
13	chr11:66236000-66246400	Weak transcription	Fetal Brain Male	brain
14	chr11:66236000-66246600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:66236000-66246600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:66236000-66246600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr11:66236000-66246600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:66236200-66246400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr11:66237600-66246400	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr11:66240200-66246600	Weak transcription	Brain Angular Gyrus	brain
21	chr11:66240400-66246600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:66240400-66246600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:66241000-66246400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:66241600-66246600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:66241800-66246400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr11:66241800-66246600	Weak transcription	Colonic Mucosa	Colon
27	chr11:66242000-66246400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:66242000-66246400	Weak transcription	Esophagus	oesophagus
29	chr11:66242000-66246400	Weak transcription	Placenta	Placenta
30	chr11:66242000-66246400	Weak transcription	HMEC	breast
31	chr11:66242000-66246600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:66242000-66246600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:66242000-66246600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr11:66242000-66246600	Weak transcription	Fetal Lung	lung
35	chr11:66242000-66246800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:66242200-66246400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:66242200-66246600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:66242200-66246600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr11:66242600-66246600	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr11:66242600-66246600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:66242600-66246800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:66242800-66246400	Weak transcription	Primary T cells from cord blood	blood
43	chr11:66242800-66246400	Weak transcription	Osteobl	bone
44	chr11:66242800-66246600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:66243000-66246800	Weak transcription	Left Ventricle	heart
46	chr11:66243200-66246400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:66243200-66246600	Weak transcription	Brain Anterior Caudate	brain
48	chr11:66243600-66246600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:66243600-66246600	Weak transcription	Aorta	Aorta
50	chr11:66243800-66246400	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links