Variant report

Variant	rs11227587
Chromosome Location	chr11:66522812-66522813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66511244..66515622-chr11:66520055..66525870,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173715	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11227574	0.84[ASN][1000 genomes]
rs11227591	1.00[ASN][1000 genomes]
rs11227600	0.97[ASN][1000 genomes]
rs11227601	0.97[ASN][1000 genomes]
rs12049897	0.81[ASN][1000 genomes]
rs12225302	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2276136	0.81[ASN][1000 genomes]
rs7932018	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897789	chr11:66372390-66634397	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	nsv897790	chr11:66414915-66626234	Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv897791	chr11:66442855-66533469	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv427891	chr11:66456140-66606701	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv468602	chr11:66468469-66634397	Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
6	nsv555225	chr11:66468469-66634397	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	nsv897792	chr11:66486143-66529101	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
8	nsv897793	chr11:66486143-66533469	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
9	esv1798614	chr11:66514847-66535177	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv516087	chr11:66516049-66579572	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66513000-66529000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:66513200-66526600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:66513200-66527600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:66513200-66530800	Weak transcription	HSMMtube	muscle
5	chr11:66513200-66541200	Weak transcription	Aorta	Aorta
6	chr11:66513200-66555000	Weak transcription	Pancreas	Pancrea
7	chr11:66513400-66526200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:66513400-66527200	Weak transcription	Fetal Thymus	thymus
9	chr11:66513400-66528000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:66513400-66528800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:66513400-66529600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:66513400-66531600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:66513400-66540800	Weak transcription	Spleen	Spleen
14	chr11:66513400-66547800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:66513400-66606800	Weak transcription	Brain Angular Gyrus	brain
16	chr11:66513600-66526600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr11:66513600-66527000	Weak transcription	Fetal Intestine Small	intestine
18	chr11:66513600-66527600	Weak transcription	Fetal Stomach	stomach
19	chr11:66513600-66528000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:66513600-66529000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:66513600-66529000	Weak transcription	Fetal Intestine Large	intestine
22	chr11:66513600-66530400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:66513600-66532600	Weak transcription	Colonic Mucosa	Colon
24	chr11:66513600-66538800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:66513800-66523200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:66513800-66526000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:66513800-66527800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:66513800-66528200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr11:66513800-66529200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:66513800-66539800	Weak transcription	GM12878-XiMat	blood
31	chr11:66514400-66530400	Weak transcription	Primary B cells from cord blood	blood
32	chr11:66515400-66527000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:66515400-66527800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:66515400-66529000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:66515400-66529200	Weak transcription	Esophagus	oesophagus
36	chr11:66515400-66529200	Weak transcription	NHDF-Ad	bronchial
37	chr11:66515400-66529600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:66515400-66529800	Weak transcription	Brain Germinal Matrix	brain
39	chr11:66515400-66535800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:66515600-66529000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:66515600-66529200	Weak transcription	Fetal Brain Female	brain
42	chr11:66516000-66528800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:66516600-66527200	Weak transcription	HUVEC	blood vessel
44	chr11:66516600-66542200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr11:66516800-66526200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:66516800-66529000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:66516800-66535000	Weak transcription	HMEC	breast
48	chr11:66516800-66535200	Weak transcription	Fetal Brain Male	brain
49	chr11:66517000-66529000	Weak transcription	NHEK	skin
50	chr11:66517000-66529200	Weak transcription	Hela-S3	cervix

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