Variant report

Variant	rs11227730
Chromosome Location	chr11:66960306-66960307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66959269..66961911-chr11:66962420..66965412,2	MCF-7	breast:
2	chr11:66941075..66944065-chr11:66959296..66961684,2	K562	blood:

Variant related genes	Relation type
ENSG00000179038	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1051180	1.00[CHB][hapmap];1.00[LWK][hapmap]
rs11227760	1.00[LWK][hapmap]
rs11604248	1.00[LWK][hapmap]
rs12289064	1.00[LWK][hapmap]
rs1573537	1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs2156820	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
2	chr11:66918800-66968000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:66926000-66966800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:66926200-66963800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:66930800-66985600	Weak transcription	Small Intestine	intestine
6	chr11:66936400-67006200	Weak transcription	Stomach Mucosa	stomach
7	chr11:66942600-66982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:66942800-66961000	Weak transcription	Gastric	stomach
9	chr11:66944000-66961200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:66945800-66984800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:66947000-66964000	Strong transcription	Fetal Thymus	thymus
12	chr11:66947600-66963000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:66948000-66970600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:66948200-66962000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:66948200-66975000	Weak transcription	Right Ventricle	heart
16	chr11:66948200-66986400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:66949600-66975000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:66951200-66965000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:66951200-66975000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:66951200-66975000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr11:66951200-66986600	Weak transcription	Fetal Brain Male	brain
22	chr11:66951600-66968000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:66952400-66963400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:66953000-66975000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr11:66953400-66961200	Weak transcription	Psoas Muscle	Psoas
26	chr11:66953400-66961400	Weak transcription	NHLF	lung
27	chr11:66953400-66962200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr11:66953400-66982800	Weak transcription	Aorta	Aorta
29	chr11:66953400-66982800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:66953600-66968000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr11:66953800-66966600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr11:66953800-66978400	Weak transcription	K562	blood
33	chr11:66953800-66982800	Weak transcription	HUVEC	blood vessel
34	chr11:66954000-66961000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr11:66954000-66961200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:66954000-66962600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:66954000-66963600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:66954000-66967200	Weak transcription	Colonic Mucosa	Colon
39	chr11:66954000-66974600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr11:66954000-66976000	Weak transcription	Brain Substantia Nigra	brain
41	chr11:66954000-66979400	Weak transcription	Brain Hippocampus Middle	brain
42	chr11:66954000-66984800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr11:66954200-66961400	Weak transcription	NH-A	brain
44	chr11:66954200-66961600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr11:66954200-66961800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr11:66954200-66961800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:66954200-66964800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr11:66954400-66961200	Weak transcription	Left Ventricle	heart
49	chr11:66954400-66961200	Weak transcription	HepG2	liver
50	chr11:66954400-66961800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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