Variant report

Variant	rs11604248
Chromosome Location	chr11:66961528-66961529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66959269..66961911-chr11:66962420..66965412,2	MCF-7	breast:
2	chr11:66935315..66937886-chr11:66960341..66962515,2	K562	blood:
3	chr11:66941075..66944065-chr11:66959296..66961684,2	K562	blood:

Variant related genes	Relation type
ENSG00000179038	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1051180	1.00[LWK][hapmap]
rs11227730	1.00[LWK][hapmap]
rs11227760	1.00[LWK][hapmap]
rs12289064	1.00[LWK][hapmap]
rs1573537	1.00[LWK][hapmap]
rs2156820	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
2	chr11:66918800-66968000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:66926000-66966800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:66926200-66963800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:66930800-66985600	Weak transcription	Small Intestine	intestine
6	chr11:66936400-67006200	Weak transcription	Stomach Mucosa	stomach
7	chr11:66942600-66982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:66945800-66984800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:66947000-66964000	Strong transcription	Fetal Thymus	thymus
10	chr11:66947600-66963000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:66948000-66970600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:66948200-66962000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:66948200-66975000	Weak transcription	Right Ventricle	heart
14	chr11:66948200-66986400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:66949600-66975000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:66951200-66965000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:66951200-66975000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:66951200-66975000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:66951200-66986600	Weak transcription	Fetal Brain Male	brain
20	chr11:66951600-66968000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:66952400-66963400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr11:66953000-66975000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:66953400-66962200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:66953400-66982800	Weak transcription	Aorta	Aorta
25	chr11:66953400-66982800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:66953600-66968000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:66953800-66966600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr11:66953800-66978400	Weak transcription	K562	blood
29	chr11:66953800-66982800	Weak transcription	HUVEC	blood vessel
30	chr11:66954000-66962600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:66954000-66963600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:66954000-66967200	Weak transcription	Colonic Mucosa	Colon
33	chr11:66954000-66974600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:66954000-66976000	Weak transcription	Brain Substantia Nigra	brain
35	chr11:66954000-66979400	Weak transcription	Brain Hippocampus Middle	brain
36	chr11:66954000-66984800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:66954200-66961600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:66954200-66961800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr11:66954200-66961800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:66954200-66964800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr11:66954400-66961800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:66954400-66962000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr11:66954400-66963400	Weak transcription	NHEK	skin
44	chr11:66954400-66963800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:66954400-66964400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr11:66954400-66966400	Weak transcription	Fetal Brain Female	brain
47	chr11:66954400-66967000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:66954400-66967600	Weak transcription	Brain Anterior Caudate	brain
49	chr11:66954400-66974600	Weak transcription	Brain Germinal Matrix	brain
50	chr11:66954600-66993000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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