Variant report

Variant	rs1573537
Chromosome Location	chr11:66983416-66983417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:66983320-66983470	GM12867	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000238892	TF binding region
KDM2A	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1051180	1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap]
rs11227730	1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs11227760	1.00[LWK][hapmap]
rs11604248	1.00[LWK][hapmap]
rs12289064	1.00[LWK][hapmap]
rs17882466	1.00[CHB][hapmap]
rs2156820	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv972951	chr11:66980475-66986736	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66930800-66985600	Weak transcription	Small Intestine	intestine
2	chr11:66936400-67006200	Weak transcription	Stomach Mucosa	stomach
3	chr11:66945800-66984800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:66948200-66986400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:66951200-66986600	Weak transcription	Fetal Brain Male	brain
6	chr11:66954000-66984800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:66954600-66993000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:66956400-67005000	Weak transcription	Fetal Heart	heart
9	chr11:66962200-66999000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:66962600-66995000	Weak transcription	Psoas Muscle	Psoas
11	chr11:66964400-66989400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:66964600-67002400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:66965200-67006400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:66966400-66989400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:66970400-66988800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:66971400-66989200	Strong transcription	Placenta	Placenta
17	chr11:66972400-66989600	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr11:66972600-66987800	Strong transcription	Fetal Stomach	stomach
19	chr11:66972600-66989000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:66972800-66987600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:66972800-66988400	Strong transcription	Fetal Intestine Large	intestine
22	chr11:66972800-67002600	Strong transcription	Fetal Muscle Trunk	muscle
23	chr11:66973000-66989200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:66973000-67005400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:66973400-66988200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:66973800-66987800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:66974400-66988000	Strong transcription	HepG2	liver
28	chr11:66974400-66988200	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:66974400-66989000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr11:66974600-66989400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:66974600-66993000	Strong transcription	Dnd41	blood
32	chr11:66974600-66993200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:66974600-66993400	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr11:66974800-66997600	Strong transcription	Fetal Thymus	thymus
35	chr11:66975000-66983800	Strong transcription	Left Ventricle	heart
36	chr11:66975000-66989400	Strong transcription	Fetal Muscle Leg	muscle
37	chr11:66975000-66993200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr11:66975400-66984800	Weak transcription	Gastric	stomach
39	chr11:66976400-66993000	Strong transcription	Osteobl	bone
40	chr11:66976600-66986200	Weak transcription	Right Ventricle	heart
41	chr11:66977400-66989200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:66977600-66983800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:66977800-66984800	Weak transcription	Esophagus	oesophagus
44	chr11:66978600-66984800	Weak transcription	Lung	lung
45	chr11:66979600-66985000	Weak transcription	Brain Anterior Caudate	brain
46	chr11:66979600-66986800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:66980200-66988000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:66980400-66986800	Strong transcription	A549	lung
49	chr11:66980400-67002200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:66980800-66983600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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