Variant report

Variant	rs11227829
Chromosome Location	chr11:67316406-67316407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:67303244..67305352-chr11:67315972..67317504,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10082595	0.83[AFR][1000 genomes]
rs10896187	0.85[AFR][1000 genomes]
rs11227843	0.85[AFR][1000 genomes]
rs11227847	0.84[AFR][1000 genomes]
rs11227853	0.85[AFR][1000 genomes]
rs11227856	0.85[AFR][1000 genomes]
rs11227858	0.85[AFR][1000 genomes]
rs11227859	0.82[AFR][1000 genomes]
rs11227863	0.81[AFR][1000 genomes]
rs11227864	0.84[AFR][1000 genomes]
rs11227867	0.83[AFR][1000 genomes]
rs11227872	0.83[AFR][1000 genomes]
rs11501414	0.83[AFR][1000 genomes]
rs12270939	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271238	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273818	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274182	1.00[AMR][1000 genomes]
rs12275583	0.90[AFR][1000 genomes]
rs12277603	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279654	0.90[AFR][1000 genomes]
rs12280141	1.00[AMR][1000 genomes]
rs12283777	0.85[AFR][1000 genomes]
rs12285190	0.83[AFR][1000 genomes]
rs12285294	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285568	0.85[AFR][1000 genomes]
rs12286629	0.88[AFR][1000 genomes]
rs12287042	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288767	0.85[AFR][1000 genomes]
rs12288862	0.85[AFR][1000 genomes]
rs12291838	1.00[AMR][1000 genomes]
rs12291861	0.83[AFR][1000 genomes]
rs12292686	1.00[AMR][1000 genomes]
rs12293788	1.00[AMR][1000 genomes]
rs12295232	0.85[AFR][1000 genomes]
rs12295962	1.00[AMR][1000 genomes]
rs28856416	0.83[AFR][1000 genomes]
rs28894705	0.85[AFR][1000 genomes]
rs6591248	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112719	0.83[AFR][1000 genomes]
rs7129806	0.83[AFR][1000 genomes]
rs8191431	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191448	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
4	nsv897807	chr11:67155210-67414492	Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
5	nsv897808	chr11:67155210-67419855	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
6	nsv534229	chr11:67164667-67411909	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
7	esv2422195	chr11:67234322-67626901	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67314000-67325400	Weak transcription	Fetal Heart	heart
2	chr11:67315600-67317000	Enhancers	Stomach Mucosa	stomach
3	chr11:67316000-67316600	Enhancers	Liver	Liver
4	chr11:67316200-67316600	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr11:67316200-67317000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:67316400-67316600	Weak transcription	Rectal Mucosa Donor 31	rectum

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