Variant report

Variant	rs12275583
Chromosome Location	chr11:67358363-67358364
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:67356922..67358645-chr11:67383393..67385813,2	K562	blood:
2	chr11:67355448..67359468-chr11:67373410..67375922,3	MCF-7	breast:
3	chr11:67351136..67354187-chr11:67356104..67360261,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167792	Chromatin interaction
ENSG00000231793	Chromatin interaction
ENSG00000084207	Chromatin interaction
ENSG00000184224	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10082595	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10896187	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227829	0.90[AFR][1000 genomes]
rs11227843	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227847	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227853	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227856	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227858	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227859	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227863	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227864	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227867	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227870	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227872	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11501414	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270939	0.89[AFR][1000 genomes]
rs12271238	0.94[AFR][1000 genomes]
rs12271246	1.00[AMR][1000 genomes]
rs12273818	0.93[AFR][1000 genomes]
rs12277603	0.86[AFR][1000 genomes]
rs12279654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279771	1.00[AMR][1000 genomes]
rs12281959	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283583	1.00[AMR][1000 genomes]
rs12283777	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285190	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285294	0.86[AFR][1000 genomes]
rs12285568	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286629	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287042	0.90[AFR][1000 genomes]
rs12288767	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288862	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288915	0.89[AFR][1000 genomes]
rs12291861	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294605	1.00[AMR][1000 genomes]
rs12295232	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28856416	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28894705	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6591248	0.91[AFR][1000 genomes]
rs7102855	0.80[AFR][1000 genomes]
rs7112719	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7129806	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7940179	1.00[AMR][1000 genomes]
rs7945411	1.00[AMR][1000 genomes]
rs7952329	1.00[AMR][1000 genomes]
rs8191431	0.94[AFR][1000 genomes]
rs8191448	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
3	nsv897807	chr11:67155210-67414492	Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
4	nsv897808	chr11:67155210-67419855	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
5	nsv534229	chr11:67164667-67411909	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
6	esv2422195	chr11:67234322-67626901	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
7	nsv1041988	chr11:67319916-67749246	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
8	nsv897814	chr11:67339949-67460529	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
9	nsv1050463	chr11:67343421-67717338	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
10	nsv1038189	chr11:67345320-67749246	Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
11	nsv1047236	chr11:67345320-67764068	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
12	nsv555268	chr11:67346743-67752972	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
13	nsv1036101	chr11:67346813-67828351	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
14	nsv541079	chr11:67346813-67828351	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
15	nsv897815	chr11:67347595-67408791	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	nsv1053811	chr11:67349444-67749246	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
17	esv1817852	chr11:67349899-67626567	Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
18	nsv468606	chr11:67352689-67816936	Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
19	nsv555269	chr11:67352689-67816936	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
20	nsv897816	chr11:67353579-67460529	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
21	nsv1041887	chr11:67357365-67464893	Flanking Active TSS Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
22	nsv541080	chr11:67357365-67464893	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
23	nsv529452	chr11:67358204-67465721	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
24	nsv492253	chr11:67358204-67574402	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67351800-67358600	Weak transcription	Primary T cells from cord blood	blood
2	chr11:67352600-67358400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:67352600-67359800	Weak transcription	Right Atrium	heart
4	chr11:67352600-67360200	Weak transcription	Brain Angular Gyrus	brain
5	chr11:67353200-67358800	Weak transcription	Fetal Brain Male	brain
6	chr11:67353600-67358400	Enhancers	Primary B cells from peripheral blood	blood
7	chr11:67354000-67358400	Weak transcription	Pancreas	Pancrea
8	chr11:67354200-67358400	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:67354200-67358400	Weak transcription	Fetal Thymus	thymus
10	chr11:67354200-67358600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:67354200-67358800	Weak transcription	Thymus	Thymus
12	chr11:67354200-67359600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:67354600-67358400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:67354600-67358600	Weak transcription	Colonic Mucosa	Colon
15	chr11:67354600-67359000	Weak transcription	Brain Substantia Nigra	brain
16	chr11:67354600-67359000	Weak transcription	Left Ventricle	heart
17	chr11:67354600-67359200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:67354600-67359800	Weak transcription	Spleen	Spleen
19	chr11:67354600-67360400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:67354600-67360400	Weak transcription	Esophagus	oesophagus
21	chr11:67354600-67360600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:67354600-67360800	Weak transcription	Ovary	ovary
23	chr11:67354800-67360200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:67355000-67373200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:67355200-67358600	Weak transcription	Brain Germinal Matrix	brain
26	chr11:67355200-67358600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:67355400-67360600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:67355800-67358400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr11:67355800-67358400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:67355800-67358600	Weak transcription	Brain Anterior Caudate	brain
31	chr11:67355800-67359200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:67355800-67359200	Weak transcription	HSMM	muscle
33	chr11:67355800-67359200	Weak transcription	Osteobl	bone
34	chr11:67355800-67359800	Weak transcription	NH-A	brain
35	chr11:67355800-67360200	Weak transcription	HUVEC	blood vessel
36	chr11:67355800-67360400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:67355800-67360400	Weak transcription	Fetal Intestine Large	intestine
38	chr11:67355800-67360800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr11:67355800-67363600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:67355800-67368600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:67356000-67358600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:67356000-67358800	Enhancers	Primary B cells from cord blood	blood
43	chr11:67356000-67358800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:67356000-67359000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:67356000-67359000	Weak transcription	HSMMtube	muscle
46	chr11:67356000-67359200	Weak transcription	NHLF	lung
47	chr11:67356000-67360200	Weak transcription	HMEC	breast
48	chr11:67356000-67360200	Weak transcription	NHEK	skin
49	chr11:67356000-67360600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr11:67356200-67358400	Weak transcription	Dnd41	blood

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