Variant report

Variant	rs28894705
Chromosome Location	chr11:67371019-67371020
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:67370584..67375680-chr11:67395595..67400853,11	MCF-7	breast:
2	chr11:67352057..67354914-chr11:67370057..67371827,2	MCF-7	breast:
3	chr11:67370569..67373136-chr17:19651754..19653561,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108602	Chromatin interaction
ENSG00000167799	Chromatin interaction
ENSG00000084207	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10082595	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10896187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227829	0.85[AFR][1000 genomes]
rs11227843	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227847	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227859	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227863	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227864	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227867	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227870	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227872	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11501414	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270939	0.87[AFR][1000 genomes]
rs12271238	0.93[AFR][1000 genomes]
rs12271246	1.00[AMR][1000 genomes]
rs12273818	0.91[AFR][1000 genomes]
rs12275583	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277603	0.84[AFR][1000 genomes]
rs12279654	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279771	1.00[AMR][1000 genomes]
rs12281959	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283583	1.00[AMR][1000 genomes]
rs12283777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285190	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285294	0.82[AFR][1000 genomes]
rs12285568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286629	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287042	0.88[AFR][1000 genomes]
rs12288767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288915	0.93[AFR][1000 genomes]
rs12291861	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294605	1.00[AMR][1000 genomes]
rs12295232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28856416	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6591248	0.90[AFR][1000 genomes]
rs7112719	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7129806	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7940179	1.00[AMR][1000 genomes]
rs7945411	1.00[AMR][1000 genomes]
rs7952329	1.00[AMR][1000 genomes]
rs8191431	0.93[AFR][1000 genomes]
rs8191448	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
3	nsv897807	chr11:67155210-67414492	Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
4	nsv897808	chr11:67155210-67419855	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
5	nsv534229	chr11:67164667-67411909	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
6	esv2422195	chr11:67234322-67626901	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
7	nsv1041988	chr11:67319916-67749246	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
8	nsv897814	chr11:67339949-67460529	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
9	nsv1050463	chr11:67343421-67717338	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
10	nsv1038189	chr11:67345320-67749246	Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
11	nsv1047236	chr11:67345320-67764068	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
12	nsv555268	chr11:67346743-67752972	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
13	nsv1036101	chr11:67346813-67828351	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
14	nsv541079	chr11:67346813-67828351	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
15	nsv897815	chr11:67347595-67408791	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	nsv1053811	chr11:67349444-67749246	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
17	esv1817852	chr11:67349899-67626567	Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
18	nsv468606	chr11:67352689-67816936	Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
19	nsv555269	chr11:67352689-67816936	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
20	nsv897816	chr11:67353579-67460529	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
21	nsv1041887	chr11:67357365-67464893	Flanking Active TSS Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
22	nsv541080	chr11:67357365-67464893	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
23	nsv529452	chr11:67358204-67465721	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
24	nsv492253	chr11:67358204-67574402	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
25	nsv1043487	chr11:67360899-67662476	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67355000-67373200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:67356200-67373800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:67368400-67373600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:67368800-67371800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:67368800-67372200	Weak transcription	Spleen	Spleen
6	chr11:67368800-67373400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:67368800-67373600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:67368800-67373800	Weak transcription	Right Atrium	heart
9	chr11:67369000-67373400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:67369400-67373600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:67370400-67371200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr11:67370600-67371200	Enhancers	Placenta	Placenta
13	chr11:67370600-67373000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:67370800-67371200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:67370800-67371800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:67370800-67371800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:67370800-67371800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:67370800-67371800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:67370800-67371800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:67370800-67373000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:67370800-67373400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr11:67370800-67373600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr11:67370800-67374000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr11:67371000-67371400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:67371000-67371400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:67371000-67371400	Weak transcription	K562	blood
27	chr11:67371000-67371800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:67371000-67371800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:67371000-67371800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:67371000-67373200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:67371000-67373600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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