Variant report

Variant	rs12283583
Chromosome Location	chr11:67292103-67292104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:67291707..67294024-chr11:67298086..67300764,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10082595	1.00[AMR][1000 genomes]
rs10896187	1.00[AMR][1000 genomes]
rs11227843	1.00[AMR][1000 genomes]
rs11227847	1.00[AMR][1000 genomes]
rs11227853	1.00[AMR][1000 genomes]
rs11227856	1.00[AMR][1000 genomes]
rs11227858	1.00[AMR][1000 genomes]
rs11227859	1.00[AMR][1000 genomes]
rs11227863	1.00[AMR][1000 genomes]
rs11227864	1.00[AMR][1000 genomes]
rs11227867	1.00[AMR][1000 genomes]
rs11227870	1.00[AMR][1000 genomes]
rs11227872	1.00[AMR][1000 genomes]
rs11501414	1.00[AMR][1000 genomes]
rs12271246	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274182	0.88[AFR][1000 genomes]
rs12275583	1.00[AMR][1000 genomes]
rs12279654	1.00[AMR][1000 genomes]
rs12279771	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280141	0.86[AFR][1000 genomes]
rs12281692	1.00[AMR][1000 genomes]
rs12281959	1.00[AMR][1000 genomes]
rs12283777	1.00[AMR][1000 genomes]
rs12285190	1.00[AMR][1000 genomes]
rs12285568	1.00[AMR][1000 genomes]
rs12286629	1.00[AMR][1000 genomes]
rs12288767	1.00[AMR][1000 genomes]
rs12288862	1.00[AMR][1000 genomes]
rs12291838	0.88[AFR][1000 genomes]
rs12291861	1.00[AMR][1000 genomes]
rs12292686	0.88[AFR][1000 genomes]
rs12293788	0.81[AFR][1000 genomes]
rs12294605	1.00[AMR][1000 genomes]
rs12295232	1.00[AMR][1000 genomes]
rs12295962	0.88[AFR][1000 genomes]
rs28856416	1.00[AMR][1000 genomes]
rs28894705	1.00[AMR][1000 genomes]
rs7112719	1.00[AMR][1000 genomes]
rs7129806	1.00[AMR][1000 genomes]
rs7940179	1.00[AMR][1000 genomes]
rs7945411	1.00[AMR][1000 genomes]
rs7952329	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
3	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
5	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
6	nsv897806	chr11:67155210-67294308	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
7	nsv897807	chr11:67155210-67414492	Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
8	nsv897808	chr11:67155210-67419855	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
9	nsv534229	chr11:67164667-67411909	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
10	nsv521723	chr11:67175692-67311258	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
11	nsv527056	chr11:67207426-67294308	Genic enhancers Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	115 gene(s)	inside rSNPs	diseases
12	esv2422195	chr11:67234322-67626901	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
13	nsv1052919	chr11:67252337-67306030	Active TSS Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
14	nsv541078	chr11:67252337-67306030	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67289800-67292800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:67290000-67292200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:67290400-67294200	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr11:67291000-67292200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:67291000-67294000	Enhancers	Colonic Mucosa	Colon
6	chr11:67291200-67292200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr11:67291200-67292600	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr11:67291200-67293400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:67291800-67292800	Weak transcription	Fetal Intestine Large	intestine
10	chr11:67291800-67292800	Weak transcription	Fetal Intestine Small	intestine
11	chr11:67292000-67292200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:67292000-67292200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
13	chr11:67292000-67293400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links