Variant report

Variant	rs11228139
Chromosome Location	chr11:67900578-67900579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10791957	1.00[CEU][hapmap]
rs10896295	0.96[CEU][hapmap]
rs11228142	1.00[CEU][hapmap]
rs11228145	0.93[CEU][hapmap]
rs11535788	1.00[CEU][hapmap]
rs2457179	1.00[CEU][hapmap]
rs2457180	0.96[CEU][hapmap]
rs2511469	0.93[CEU][hapmap]
rs2511472	0.93[CEU][hapmap]
rs2512611	1.00[CEU][hapmap]
rs2512612	1.00[CEU][hapmap]
rs2512623	0.92[CEU][hapmap]
rs3935460	1.00[CEU][hapmap]
rs4073551	1.00[CEU][hapmap]
rs4147780	0.82[CEU][hapmap]
rs4930557	1.00[CEU][hapmap]
rs7928739	0.96[CEU][hapmap]
rs7940501	1.00[CEU][hapmap]
rs7944372	1.00[CEU][hapmap]
rs884826	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427892	chr11:67451649-67926562	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67896800-67900800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:67897000-67905000	Weak transcription	Liver	Liver
3	chr11:67897200-67907800	Weak transcription	Fetal Heart	heart
4	chr11:67897200-67908200	Weak transcription	Gastric	stomach
5	chr11:67897800-67905000	Weak transcription	Pancreas	Pancrea
6	chr11:67899000-67912200	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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