Variant report

Variant	rs10896295
Chromosome Location	chr11:67898937-67898938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:67887526..67889554-chr11:67897461..67899656,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110721	Chromatin interaction
ENSG00000255236	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10791956	0.92[EUR][1000 genomes]
rs10791957	0.95[CEU][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10791959	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10896293	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11228133	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11228136	0.81[EUR][1000 genomes]
rs11228137	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11228139	0.96[CEU][hapmap]
rs11228141	0.84[ASN][1000 genomes]
rs11228142	0.96[CEU][hapmap]
rs11228145	0.88[CEU][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11535788	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2457179	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs2457180	0.91[CEU][hapmap]
rs2511468	0.83[ASN][1000 genomes]
rs2511469	0.88[CEU][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2511470	0.84[ASN][1000 genomes]
rs2511472	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2511473	0.86[ASN][1000 genomes]
rs2511475	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2512608	0.91[EUR][1000 genomes]
rs2512611	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs2512612	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs2512623	0.87[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2512624	0.87[ASN][1000 genomes]
rs3935460	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs4073551	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs4420277	0.84[EUR][1000 genomes]
rs4930557	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61890478	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6591331	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6591333	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7104982	0.89[EUR][1000 genomes]
rs7123183	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7123668	0.90[EUR][1000 genomes]
rs7124058	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71480230	0.85[EUR][1000 genomes]
rs7925022	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7925423	0.91[EUR][1000 genomes]
rs7928739	0.91[CEU][hapmap]
rs7940113	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940217	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7940501	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944372	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427892	chr11:67451649-67926562	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67896800-67900800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:67897000-67905000	Weak transcription	Liver	Liver
3	chr11:67897200-67907800	Weak transcription	Fetal Heart	heart
4	chr11:67897200-67908200	Weak transcription	Gastric	stomach
5	chr11:67897400-67899400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:67897800-67905000	Weak transcription	Pancreas	Pancrea
7	chr11:67898600-67899000	Enhancers	Hela-S3	cervix

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