Variant report

Variant	rs7925423
Chromosome Location	chr11:67879933-67879934
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:67878032..67880524-chr11:67975715..67978207,2	MCF-7	breast:
2	chr11:67879272..67883726-chr11:67883883..67887587,4	MCF-7	breast:
3	chr11:67874817..67876350-chr11:67879453..67881412,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10791956	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10791957	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10791959	0.80[EUR][1000 genomes]
rs10896293	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10896295	0.91[EUR][1000 genomes]
rs11228131	0.86[ASN][1000 genomes]
rs11228133	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11228136	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11228137	0.88[ASN][1000 genomes]
rs11228145	0.86[EUR][1000 genomes]
rs11535788	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2457179	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2457180	0.83[ASN][1000 genomes]
rs2511469	0.86[EUR][1000 genomes]
rs2511472	0.85[EUR][1000 genomes]
rs2512608	0.91[EUR][1000 genomes]
rs2512611	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2512612	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2512623	0.86[EUR][1000 genomes]
rs3935460	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4073551	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4420277	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4930557	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61890478	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6591331	0.89[ASN][1000 genomes]
rs6591333	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7104982	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7123183	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7123668	0.90[EUR][1000 genomes]
rs7124058	0.86[EUR][1000 genomes]
rs71480230	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7925022	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7928739	0.80[ASN][1000 genomes]
rs7940113	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7940217	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7940501	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7944372	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427892	chr11:67451649-67926562	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	esv2757450	chr11:67472905-67891289	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	112 gene(s)	inside rSNPs	diseases
3	esv2759835	chr11:67472905-67891289	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	112 gene(s)	inside rSNPs	diseases
4	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67831400-67884400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:67839800-67886000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:67848400-67886400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:67849000-67885400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:67849400-67887400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:67862400-67881400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:67864400-67883400	Weak transcription	Hela-S3	cervix
8	chr11:67867400-67884200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:67867400-67884400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:67867400-67885200	Weak transcription	HSMMtube	muscle
11	chr11:67867400-67885600	Weak transcription	Primary B cells from cord blood	blood
12	chr11:67867400-67886200	Weak transcription	Thymus	Thymus
13	chr11:67867600-67881400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:67867600-67884400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:67867600-67885400	Weak transcription	HSMM	muscle
16	chr11:67867800-67881400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:67868400-67882600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr11:67868400-67887400	Weak transcription	Primary T cells from cord blood	blood
19	chr11:67869000-67882600	Weak transcription	Dnd41	blood
20	chr11:67873400-67885400	Weak transcription	Fetal Thymus	thymus
21	chr11:67874000-67885600	Weak transcription	Right Ventricle	heart
22	chr11:67874200-67884200	Weak transcription	Fetal Stomach	stomach
23	chr11:67874400-67884000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:67874400-67884400	Weak transcription	Brain Angular Gyrus	brain
25	chr11:67874400-67884400	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:67874400-67884400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr11:67874400-67885600	Weak transcription	Left Ventricle	heart
28	chr11:67874400-67886200	Weak transcription	Brain Germinal Matrix	brain
29	chr11:67875200-67884400	Weak transcription	Right Atrium	heart
30	chr11:67875400-67881600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:67875400-67882200	Weak transcription	Brain Substantia Nigra	brain
32	chr11:67875400-67882600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:67875400-67884600	Weak transcription	A549	lung
34	chr11:67875400-67888200	Weak transcription	Spleen	Spleen
35	chr11:67875600-67881400	Weak transcription	Fetal Lung	lung
36	chr11:67875600-67881800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr11:67875600-67881800	Weak transcription	Brain Hippocampus Middle	brain
38	chr11:67875600-67882800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:67875600-67882800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:67875600-67883400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr11:67875600-67883600	Weak transcription	Liver	Liver
42	chr11:67875600-67884200	Weak transcription	K562	blood
43	chr11:67875600-67884400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:67875600-67884600	Weak transcription	Fetal Brain Female	brain
45	chr11:67875600-67885200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr11:67875600-67885400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:67875600-67885600	Weak transcription	Lung	lung
48	chr11:67875800-67881400	Weak transcription	Small Intestine	intestine
49	chr11:67875800-67881600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:67875800-67882200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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