Variant report

Variant	rs7124058
Chromosome Location	chr11:67907662-67907663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:67905786..67907914-chr11:67912472..67915120,3	MCF-7	breast:
2	chr11:67907520..67909318-chr11:67911352..67914031,2	K562	blood:
3	chr11:67815962..67818507-chr11:67905392..67908052,2	K562	blood:
4	chr11:67894876..67897320-chr11:67906822..67909405,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255031	Chromatin interaction
ENSG00000110719	Chromatin interaction
ENSG00000255236	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10791956	0.87[EUR][1000 genomes]
rs10791957	0.89[EUR][1000 genomes]
rs10791959	0.87[EUR][1000 genomes]
rs10896293	0.90[EUR][1000 genomes]
rs10896295	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11228133	0.83[EUR][1000 genomes]
rs11228144	0.87[ASN][1000 genomes]
rs11228145	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11535788	0.89[EUR][1000 genomes]
rs2457179	0.87[EUR][1000 genomes]
rs2511467	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2511468	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2511469	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2511470	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2511472	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2511473	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2511475	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2511478	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2511479	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2512608	0.88[EUR][1000 genomes]
rs2512611	0.87[EUR][1000 genomes]
rs2512612	0.88[EUR][1000 genomes]
rs2512623	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2512624	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3935460	0.88[EUR][1000 genomes]
rs4073551	0.85[EUR][1000 genomes]
rs4930228	0.81[ASN][1000 genomes]
rs4930557	0.89[EUR][1000 genomes]
rs61890478	0.89[EUR][1000 genomes]
rs6591333	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7104982	0.86[EUR][1000 genomes]
rs7123183	0.91[EUR][1000 genomes]
rs7123668	0.87[EUR][1000 genomes]
rs71480230	0.80[EUR][1000 genomes]
rs7925022	0.90[EUR][1000 genomes]
rs7925423	0.86[EUR][1000 genomes]
rs7940113	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7940217	0.86[EUR][1000 genomes]
rs7940501	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7944372	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427892	chr11:67451649-67926562	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67897200-67907800	Weak transcription	Fetal Heart	heart
2	chr11:67897200-67908200	Weak transcription	Gastric	stomach
3	chr11:67899000-67912200	Weak transcription	Hela-S3	cervix
4	chr11:67905600-67907800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:67905600-67907800	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:67905800-67908000	Weak transcription	Brain Angular Gyrus	brain
7	chr11:67905800-67908000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:67905800-67909400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:67906000-67907800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:67906000-67907800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:67906000-67908600	Weak transcription	Fetal Lung	lung
12	chr11:67906000-67912600	Weak transcription	Ovary	ovary
13	chr11:67906000-67912800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr11:67906000-67912800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:67906200-67908000	Weak transcription	Fetal Intestine Small	intestine
16	chr11:67906200-67908000	Weak transcription	Stomach Mucosa	stomach
17	chr11:67906200-67908200	Weak transcription	Liver	Liver
18	chr11:67906400-67912200	Weak transcription	A549	lung
19	chr11:67906800-67907800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr11:67906800-67908000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:67906800-67908000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr11:67906800-67908200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:67907200-67908200	Enhancers	K562	blood
24	chr11:67907200-67911000	Enhancers	Primary hematopoietic stem cells	blood
25	chr11:67907400-67908200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr11:67907400-67911000	Enhancers	Pancreas	Pancrea
27	chr11:67907600-67908000	Weak transcription	HepG2	liver
28	chr11:67907600-67909600	Enhancers	Brain Substantia Nigra	brain
29	chr11:67907600-67910800	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links