Variant report

Variant	rs2512624
Chromosome Location	chr11:67904698-67904699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:67894358..67896258-chr11:67903014..67905815,2	MCF-7	breast:
2	chr11:67895974..67897618-chr11:67904022..67906974,2	K562	blood:
3	chr11:67887284..67889533-chr11:67904516..67906212,3	MCF-7	breast:
4	chr11:67903980..67906929-chr11:67911464..67914322,2	K562	blood:

Variant related genes	Relation type
ENSG00000255236	Chromatin interaction
ENSG00000110721	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10791959	0.80[AMR][1000 genomes]
rs10896293	0.80[AMR][1000 genomes]
rs10896295	0.87[ASN][1000 genomes]
rs11228129	0.90[EUR][1000 genomes]
rs11228131	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11228137	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11228144	0.84[ASN][1000 genomes]
rs11228145	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11535788	0.83[AMR][1000 genomes]
rs11824199	0.87[EUR][1000 genomes]
rs2511437	0.89[EUR][1000 genomes]
rs2511467	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2511468	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2511469	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2511470	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2511472	0.94[ASN][1000 genomes]
rs2511473	0.93[ASN][1000 genomes]
rs2511475	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511478	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2511479	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2512623	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3133327	0.90[EUR][1000 genomes]
rs4930228	0.81[ASN][1000 genomes]
rs4930557	0.83[AMR][1000 genomes]
rs61890478	0.83[AMR][1000 genomes]
rs6591331	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6591333	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7123183	0.83[AMR][1000 genomes]
rs7124058	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7925022	0.83[AMR][1000 genomes]
rs7940113	0.87[ASN][1000 genomes]
rs7940501	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7944372	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427892	chr11:67451649-67926562	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67897000-67905000	Weak transcription	Liver	Liver
2	chr11:67897200-67907800	Weak transcription	Fetal Heart	heart
3	chr11:67897200-67908200	Weak transcription	Gastric	stomach
4	chr11:67897800-67905000	Weak transcription	Pancreas	Pancrea
5	chr11:67899000-67912200	Weak transcription	Hela-S3	cervix
6	chr11:67901600-67905400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:67902800-67905200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:67902800-67905200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:67903800-67905200	Enhancers	HepG2	liver
10	chr11:67904600-67905400	Weak transcription	Brain Angular Gyrus	brain
11	chr11:67904600-67905400	Weak transcription	Brain Substantia Nigra	brain

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