Variant report

Variant	rs11228145
Chromosome Location	chr11:67909382-67909383
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:67900826..67903495-chr11:67908727..67910811,2	K562	blood:
2	chr11:67908238..67910865-chr11:67914661..67917297,2	MCF-7	breast:
3	chr11:67887330..67890374-chr11:67908714..67912582,4	MCF-7	breast:
4	chr11:67905446..67906949-chr11:67908407..67910664,2	MCF-7	breast:
5	chr11:67893937..67896005-chr11:67908113..67910467,2	MCF-7	breast:
6	chr11:67900826..67903728-chr11:67908566..67910811,2	K562	blood:
7	chr11:67894406..67897015-chr11:67908475..67910662,2	K562	blood:
8	chr11:67894876..67897320-chr11:67906822..67909405,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255236	Chromatin interaction
ENSG00000110721	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10791956	0.87[EUR][1000 genomes]
rs10791957	0.92[CEU][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes]
rs10791959	0.87[EUR][1000 genomes]
rs10896293	0.90[EUR][1000 genomes]
rs10896295	0.88[CEU][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10896298	0.80[JPT][hapmap]
rs11228131	0.89[JPT][hapmap]
rs11228133	0.83[EUR][1000 genomes]
rs11228139	0.93[CEU][hapmap]
rs11228142	0.93[CEU][hapmap]
rs11228144	0.83[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs11535788	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs1894204	0.80[JPT][hapmap]
rs2457179	0.92[CEU][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs2457180	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs2511437	0.89[JPT][hapmap]
rs2511467	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2511468	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2511469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2511470	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2511472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2511473	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2511475	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2511478	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2511479	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2512608	0.88[EUR][1000 genomes]
rs2512611	0.92[CEU][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs2512612	0.92[CEU][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes]
rs2512623	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2512624	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133327	0.89[JPT][hapmap]
rs3935460	0.92[CEU][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes]
rs4073551	0.92[CEU][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs4930228	0.86[ASN][1000 genomes]
rs4930557	0.92[CEU][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes]
rs4930561	0.80[JPT][hapmap]
rs61890478	0.89[EUR][1000 genomes]
rs6591331	0.90[JPT][hapmap]
rs6591333	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7104982	0.86[EUR][1000 genomes]
rs7123183	0.91[EUR][1000 genomes]
rs7123668	0.87[EUR][1000 genomes]
rs7124058	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71480230	0.80[EUR][1000 genomes]
rs7925022	0.90[EUR][1000 genomes]
rs7925423	0.86[EUR][1000 genomes]
rs7928739	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs7931502	0.80[JPT][hapmap]
rs7940113	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7940217	0.86[EUR][1000 genomes]
rs7940501	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7944372	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427892	chr11:67451649-67926562	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67899000-67912200	Weak transcription	Hela-S3	cervix
2	chr11:67905800-67909400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:67906000-67912600	Weak transcription	Ovary	ovary
4	chr11:67906000-67912800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:67906000-67912800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:67906400-67912200	Weak transcription	A549	lung
7	chr11:67907200-67911000	Enhancers	Primary hematopoietic stem cells	blood
8	chr11:67907400-67911000	Enhancers	Pancreas	Pancrea
9	chr11:67907600-67909600	Enhancers	Brain Substantia Nigra	brain
10	chr11:67907600-67910800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr11:67907800-67909800	Enhancers	Brain Cingulate Gyrus	brain
12	chr11:67907800-67910000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:67907800-67910400	Enhancers	Brain Hippocampus Middle	brain
14	chr11:67908000-67909600	Enhancers	Fetal Muscle Trunk	muscle
15	chr11:67908000-67909800	Enhancers	Brain Anterior Caudate	brain
16	chr11:67908000-67910000	Enhancers	Brain Angular Gyrus	brain
17	chr11:67908000-67910000	Enhancers	Brain Germinal Matrix	brain
18	chr11:67908000-67910000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:67908000-67910200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:67908000-67910200	Enhancers	Right Ventricle	heart
21	chr11:67908000-67910800	Enhancers	Stomach Mucosa	stomach
22	chr11:67908000-67911000	Enhancers	HepG2	liver
23	chr11:67908200-67909400	Enhancers	Fetal Muscle Leg	muscle
24	chr11:67908200-67910000	Enhancers	Primary B cells from peripheral blood	blood
25	chr11:67908200-67910000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr11:67908200-67910000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:67908200-67910200	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr11:67908200-67910400	Enhancers	Thymus	Thymus
29	chr11:67908200-67910800	Enhancers	Liver	Liver
30	chr11:67908200-67910800	Enhancers	Fetal Thymus	thymus
31	chr11:67908200-67910800	Enhancers	Gastric	stomach
32	chr11:67908200-67910800	Enhancers	Dnd41	blood
33	chr11:67908200-67912200	Weak transcription	K562	blood
34	chr11:67908400-67909400	Enhancers	Duodenum Mucosa	Duodenum
35	chr11:67908400-67912200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:67908400-67912400	Weak transcription	Fetal Intestine Small	intestine
37	chr11:67908400-67912600	Weak transcription	Fetal Heart	heart
38	chr11:67908600-67909400	Weak transcription	Fetal Brain Female	brain
39	chr11:67908600-67909600	Enhancers	Adipose Nuclei	Adipose
40	chr11:67908600-67910000	Enhancers	Primary B cells from cord blood	blood
41	chr11:67908600-67910000	Enhancers	Left Ventricle	heart
42	chr11:67908600-67910400	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr11:67908600-67910600	Enhancers	Spleen	Spleen
44	chr11:67908600-67910800	Enhancers	Esophagus	oesophagus
45	chr11:67908800-67909400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
46	chr11:67908800-67909600	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr11:67908800-67909800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:67908800-67910000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:67908800-67910400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr11:67908800-67910800	Enhancers	Lung	lung

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