Variant report

Variant	rs7931502
Chromosome Location	chr11:67959607-67959608
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10791957	0.81[MEX][hapmap]
rs10896298	0.95[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10896301	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896303	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896304	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10896305	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11228131	0.81[MEX][hapmap]
rs11228145	0.80[JPT][hapmap]
rs12225316	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1894204	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2011157	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2054865	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2457179	0.81[MEX][hapmap]
rs2511437	0.81[MEX][hapmap]
rs2511467	0.80[JPT][hapmap]
rs2511469	0.80[JPT][hapmap]
rs2511470	0.84[JPT][hapmap];0.85[MEX][hapmap]
rs2511475	0.80[JPT][hapmap];0.85[MEX][hapmap]
rs2511479	0.80[JPT][hapmap]
rs2512611	0.81[MEX][hapmap]
rs2512612	0.81[MEX][hapmap]
rs2512623	0.84[GIH][hapmap];0.80[JPT][hapmap];0.81[MEX][hapmap]
rs3133327	0.81[MEX][hapmap]
rs34236202	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34493482	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4073551	0.81[MEX][hapmap]
rs4345973	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4930228	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4930229	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4930230	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4930561	0.95[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4930563	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4930564	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61890513	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7940501	0.80[JPT][hapmap];0.81[MEX][hapmap]
rs7944372	0.80[JPT][hapmap];0.81[MEX][hapmap]
rs7950452	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7931502	SUV420H1	Cis_1M	lymphoblastoid	RTeQTL
rs7931502	GPR152	cis	cerebellum	SCAN
rs7931502	FGF19	cis	parietal	SCAN

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67915000-67973800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:67938200-67961200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:67938600-67960600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:67943400-67960200	Weak transcription	Fetal Brain Male	brain
5	chr11:67946200-67959800	Weak transcription	K562	blood
6	chr11:67947400-67971200	Weak transcription	Fetal Kidney	kidney
7	chr11:67947400-67971400	Weak transcription	Spleen	Spleen
8	chr11:67947600-67960200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:67952200-67963600	Weak transcription	Colonic Mucosa	Colon
10	chr11:67952200-67968000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:67952400-67959800	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:67952400-67968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:67952600-67977000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:67953000-67976800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:67953400-67967800	Weak transcription	NHDF-Ad	bronchial
16	chr11:67953600-67967600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:67953800-67960000	Weak transcription	GM12878-XiMat	blood
18	chr11:67953800-67978600	Weak transcription	Aorta	Aorta
19	chr11:67954000-67959800	Weak transcription	Osteobl	bone
20	chr11:67954000-67976200	Weak transcription	Placenta	Placenta
21	chr11:67954200-67960200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:67954200-67960200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:67954200-67960400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:67954200-67961400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:67954200-67966800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:67954200-67967600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:67954200-67976800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:67954400-67960000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:67954400-67960200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr11:67954400-67960200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:67954400-67960400	Weak transcription	Fetal Lung	lung
32	chr11:67954400-67968200	Weak transcription	NH-A	brain
33	chr11:67954400-67976800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:67954600-67960000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr11:67954600-67960200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr11:67954600-67968200	Weak transcription	Dnd41	blood
37	chr11:67954600-67971200	Weak transcription	Brain Germinal Matrix	brain
38	chr11:67954600-67976600	Weak transcription	Thymus	Thymus
39	chr11:67955000-67959800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:67955200-67960000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:67955200-67962000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:67955400-67959800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:67955400-67960800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:67956400-67966000	Weak transcription	Fetal Intestine Small	intestine
45	chr11:67956400-67978600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr11:67956600-67959800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:67956600-67960200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:67956600-67966600	Weak transcription	Fetal Intestine Large	intestine
49	chr11:67956600-67966800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:67956600-67967200	Weak transcription	Fetal Muscle Leg	muscle

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