Variant report

Variant	rs2511468
Chromosome Location	chr11:67911189-67911190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:67911074..67916286-chr11:67916332..67921436,6	MCF-7	breast:
2	chr11:67910431..67914076-chr11:67923227..67925400,4	K562	blood:
3	chr11:67910888..67913009-chr7:6675598..6677848,2	MCF-7	breast:
4	chr11:67909537..67912529-chr11:67915738..67917856,2	K562	blood:
5	chr11:67887330..67890374-chr11:67908714..67912582,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205903	Chromatin interaction
ENSG00000110721	Chromatin interaction
ENSG00000255236	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10896295	0.83[ASN][1000 genomes]
rs11228129	0.85[EUR][1000 genomes]
rs11228131	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11228137	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11228144	0.85[ASN][1000 genomes]
rs11228145	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11824199	0.83[EUR][1000 genomes]
rs2511437	0.85[EUR][1000 genomes]
rs2511467	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2511469	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2511470	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2511472	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2511473	0.92[ASN][1000 genomes]
rs2511475	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2511478	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2511479	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2512623	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2512624	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133327	0.85[EUR][1000 genomes]
rs4930228	0.82[ASN][1000 genomes]
rs6591331	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6591333	0.81[ASN][1000 genomes]
rs7124058	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7940113	0.83[ASN][1000 genomes]
rs7940501	0.83[ASN][1000 genomes]
rs7944372	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427892	chr11:67451649-67926562	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67899000-67912200	Weak transcription	Hela-S3	cervix
2	chr11:67906000-67912600	Weak transcription	Ovary	ovary
3	chr11:67906000-67912800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:67906000-67912800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:67906400-67912200	Weak transcription	A549	lung
6	chr11:67908200-67912200	Weak transcription	K562	blood
7	chr11:67908400-67912200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:67908400-67912400	Weak transcription	Fetal Intestine Small	intestine
9	chr11:67908400-67912600	Weak transcription	Fetal Heart	heart
10	chr11:67908800-67912600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:67908800-67914000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:67909000-67913800	Weak transcription	Fetal Lung	lung
13	chr11:67909600-67913200	Weak transcription	Adipose Nuclei	Adipose
14	chr11:67909600-67913600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:67909600-67913800	Weak transcription	Brain Substantia Nigra	brain
16	chr11:67909800-67913600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:67909800-67913800	Weak transcription	Brain Anterior Caudate	brain
18	chr11:67910000-67912600	Weak transcription	Left Ventricle	heart
19	chr11:67910000-67913200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:67910000-67913800	Weak transcription	Brain Germinal Matrix	brain
21	chr11:67910000-67913800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:67910000-67914200	Weak transcription	Brain Angular Gyrus	brain
23	chr11:67910000-67914400	Weak transcription	HSMMtube	muscle
24	chr11:67910000-67918000	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr11:67910000-67921200	Weak transcription	Primary B cells from cord blood	blood
26	chr11:67910200-67912000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr11:67910200-67912000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:67910200-67912600	Weak transcription	Right Ventricle	heart
29	chr11:67910200-67913600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:67910200-67913800	Weak transcription	Colonic Mucosa	Colon
31	chr11:67910400-67911200	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr11:67910400-67912400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:67910400-67912600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr11:67910400-67913800	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:67910400-67913800	Weak transcription	HMEC	breast
36	chr11:67910600-67911600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr11:67910600-67912200	Weak transcription	Spleen	Spleen
38	chr11:67910800-67912200	Weak transcription	Liver	Liver
39	chr11:67910800-67912200	Weak transcription	Gastric	stomach
40	chr11:67910800-67912200	Weak transcription	Stomach Mucosa	stomach
41	chr11:67910800-67912400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:67910800-67912600	Weak transcription	Lung	lung
43	chr11:67910800-67913200	Weak transcription	Esophagus	oesophagus
44	chr11:67910800-67922600	Weak transcription	Fetal Thymus	thymus
45	chr11:67911000-67912000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:67911000-67912000	Weak transcription	HepG2	liver
47	chr11:67911000-67912200	Weak transcription	Pancreas	Pancrea
48	chr11:67911000-67912600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:67911000-67914800	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links