Variant report

Variant	rs11228707
Chromosome Location	chr11:56428021-56428022
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11228713	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274677	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12276015	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277890	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12280487	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573871	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577186	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1355247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943637	0.89[JPT][hapmap]
rs1943638	0.86[JPT][hapmap]
rs72919645	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971952	chr11:56361311-56452186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949349	chr11:56371633-56593610	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1051853	chr11:56393347-56523720	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56427600-56428200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr11:56427600-56428200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr11:56427600-56428400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr11:56427600-56428800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:56427800-56428600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:56428000-56428200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr11:56428000-56428600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:56428000-56428600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:56428000-56428800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:56428000-56429600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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