Variant report

Variant	rs11229305
Chromosome Location	chr11:57998361-57998362
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10750894	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10750895	0.81[ASN][1000 genomes]
rs10792159	0.89[ASN][1000 genomes]
rs10896736	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10896738	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10896742	0.87[ASN][1000 genomes]
rs10896749	0.81[ASN][1000 genomes]
rs11229304	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11229333	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11229353	0.81[ASN][1000 genomes]
rs11229355	0.81[ASN][1000 genomes]
rs11229365	0.81[ASN][1000 genomes]
rs11229366	0.81[ASN][1000 genomes]
rs11229409	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11229410	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11229411	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11229412	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11229413	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12279895	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12280114	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1893902	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1938637	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1938646	0.81[ASN][1000 genomes]
rs1938647	0.81[ASN][1000 genomes]
rs1938657	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1938658	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1938662	0.81[ASN][1000 genomes]
rs1938663	0.81[ASN][1000 genomes]
rs1938664	0.81[ASN][1000 genomes]
rs1986404	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2000486	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2226414	0.81[ASN][1000 genomes]
rs3887001	0.81[ASN][1000 genomes]
rs4127345	0.89[ASN][1000 genomes]
rs4127346	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4127348	0.81[ASN][1000 genomes]
rs4127353	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4288769	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4323891	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4439529	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4611224	0.81[ASN][1000 genomes]
rs61902844	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6591469	0.81[ASN][1000 genomes]
rs6591475	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7101864	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7102222	0.81[ASN][1000 genomes]
rs7102784	0.89[ASN][1000 genomes]
rs7104814	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7110266	0.81[ASN][1000 genomes]
rs7113008	0.82[CHB][hapmap]
rs7117244	0.81[ASN][1000 genomes]
rs7127035	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7930778	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv832165	chr11:57806024-58009076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv832166	chr11:57852031-58006189	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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