Variant report

Variant	rs7930778
Chromosome Location	chr11:58036356-58036357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10750894	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10750895	0.88[ASN][1000 genomes]
rs10750898	0.86[ASN][1000 genomes]
rs10792159	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10792165	0.86[ASN][1000 genomes]
rs10896736	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10896738	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10896742	0.94[ASN][1000 genomes]
rs10896749	0.88[ASN][1000 genomes]
rs10896755	0.86[ASN][1000 genomes]
rs10896760	0.86[ASN][1000 genomes]
rs10896761	0.86[ASN][1000 genomes]
rs10896774	0.83[ASN][1000 genomes]
rs10896775	0.82[ASN][1000 genomes]
rs11229304	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11229305	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11229333	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11229353	0.88[ASN][1000 genomes]
rs11229355	0.88[ASN][1000 genomes]
rs11229365	0.88[ASN][1000 genomes]
rs11229366	0.88[ASN][1000 genomes]
rs11229396	0.83[ASN][1000 genomes]
rs11229397	0.83[ASN][1000 genomes]
rs11229409	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11229410	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs11229411	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs11229412	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs11229413	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs11229463	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs11607488	0.83[ASN][1000 genomes]
rs12269745	0.83[ASN][1000 genomes]
rs12274866	0.83[ASN][1000 genomes]
rs12278357	0.83[ASN][1000 genomes]
rs12279895	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs12280114	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12283414	0.83[ASN][1000 genomes]
rs12285111	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12286421	0.83[ASN][1000 genomes]
rs12289198	0.83[ASN][1000 genomes]
rs12290089	0.83[ASN][1000 genomes]
rs12291551	0.83[ASN][1000 genomes]
rs12575804	0.83[ASN][1000 genomes]
rs12786744	0.83[ASN][1000 genomes]
rs12788786	0.83[ASN][1000 genomes]
rs12789701	0.83[ASN][1000 genomes]
rs12797488	0.83[ASN][1000 genomes]
rs12798255	0.83[ASN][1000 genomes]
rs12802819	0.83[ASN][1000 genomes]
rs12802960	0.83[ASN][1000 genomes]
rs12803648	0.83[ASN][1000 genomes]
rs12804134	0.83[ASN][1000 genomes]
rs17474373	0.81[ASN][1000 genomes]
rs1893902	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs1938637	1.00[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1938646	0.88[ASN][1000 genomes]
rs1938647	0.88[ASN][1000 genomes]
rs1938657	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1938658	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1938662	0.88[ASN][1000 genomes]
rs1938663	0.88[ASN][1000 genomes]
rs1938664	0.88[ASN][1000 genomes]
rs1986404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2000486	0.92[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2003231	0.83[ASN][1000 genomes]
rs2186407	0.84[ASN][1000 genomes]
rs2226414	0.86[ASN][1000 genomes]
rs35279927	0.81[ASN][1000 genomes]
rs35542119	0.83[ASN][1000 genomes]
rs3887001	0.88[ASN][1000 genomes]
rs4085405	0.86[ASN][1000 genomes]
rs4127345	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4127346	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4127348	0.88[ASN][1000 genomes]
rs4127353	1.00[CHB][hapmap];0.87[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4288769	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4323891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4347409	0.83[ASN][1000 genomes]
rs4439529	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4439530	0.87[ASN][1000 genomes]
rs4506677	0.81[ASN][1000 genomes]
rs4517537	0.81[ASN][1000 genomes]
rs4519112	0.82[ASN][1000 genomes]
rs4544018	0.87[ASN][1000 genomes]
rs4561231	0.86[ASN][1000 genomes]
rs4579945	0.81[ASN][1000 genomes]
rs4611223	0.86[ASN][1000 genomes]
rs4611224	0.88[ASN][1000 genomes]
rs61902844	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6591469	0.88[ASN][1000 genomes]
rs6591475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7101864	0.83[ASW][hapmap];0.89[CEU][hapmap];0.92[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7102222	0.88[ASN][1000 genomes]
rs7102784	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7104814	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7110266	0.88[ASN][1000 genomes]
rs7112578	0.82[ASN][1000 genomes]
rs7117244	0.88[ASN][1000 genomes]
rs7127035	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs734776	0.86[ASN][1000 genomes]
rs754681	0.86[ASN][1000 genomes]
rs7926741	0.86[ASN][1000 genomes]
rs7931394	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7930778	OR4C15	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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