Variant report

Variant	rs11229905
Chromosome Location	chr11:59034323-59034324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr11:59034300-59035011	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59032632..59035314-chr11:59038415..59042026,3	MCF-7	breast:

Variant related genes	Relation type
SLC25A47P1	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10896948	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10896951	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10896954	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11229825	1.00[CEU][hapmap]
rs11229835	1.00[CEU][hapmap]
rs11229836	1.00[CEU][hapmap]
rs11229841	1.00[CEU][hapmap]
rs11229845	1.00[CEU][hapmap]
rs11229847	1.00[CEU][hapmap]
rs11229853	1.00[CEU][hapmap]
rs11229871	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11229876	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11229878	1.00[EUR][1000 genomes]
rs11229888	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11229890	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11229891	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11229892	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11229893	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11229894	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12221768	1.00[CEU][hapmap]
rs12222675	1.00[CEU][hapmap]
rs12223085	1.00[CEU][hapmap]
rs12223473	1.00[CEU][hapmap]
rs12225328	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12225532	1.00[CEU][hapmap]
rs12225972	1.00[CEU][hapmap]
rs12226710	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12275736	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12275799	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12284698	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7951382	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv1821250	chr11:58925860-59059179	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv3351601	chr11:58979308-59052763	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3381199	chr11:59015574-59068938	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59029800-59039000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr11:59029800-59040400	Enhancers	Primary B cells from cord blood	blood
3	chr11:59030000-59035400	Enhancers	Primary B cells from peripheral blood	blood
4	chr11:59031200-59035400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:59031400-59039000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:59031600-59035000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:59031800-59036800	Enhancers	Placenta	Placenta
8	chr11:59032000-59036200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:59032200-59034400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:59032200-59036000	Enhancers	HMEC	breast
11	chr11:59032200-59036200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:59032400-59036000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:59032600-59039200	Weak transcription	Spleen	Spleen
14	chr11:59033400-59036000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:59033600-59034600	Weak transcription	Liver	Liver
16	chr11:59033800-59034800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:59034000-59035800	Enhancers	NHEK	skin
18	chr11:59034000-59036600	Enhancers	GM12878-XiMat	blood
19	chr11:59034200-59036000	Enhancers	Fetal Muscle Trunk	muscle
20	chr11:59034200-59040400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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