Variant report

Variant	rs12226710
Chromosome Location	chr11:58966585-58966586
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58965350..58967511-chr11:58968556..58970578,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10896948	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896951	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896954	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11229825	1.00[CEU][hapmap]
rs11229835	1.00[CEU][hapmap]
rs11229836	1.00[CEU][hapmap]
rs11229841	1.00[CEU][hapmap]
rs11229845	1.00[CEU][hapmap]
rs11229847	1.00[CEU][hapmap]
rs11229853	1.00[CEU][hapmap]
rs11229871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229876	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11229888	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11229890	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11229891	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11229892	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11229893	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11229894	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11229905	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12221768	1.00[CEU][hapmap]
rs12222675	1.00[CEU][hapmap]
rs12223085	1.00[CEU][hapmap]
rs12223473	1.00[CEU][hapmap]
rs12225328	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12225532	1.00[CEU][hapmap]
rs12225972	1.00[CEU][hapmap]
rs12275736	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275799	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12284698	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951382	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv2758272	chr11:58700092-59008673	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2759830	chr11:58700092-59008673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	esv1821250	chr11:58925860-59059179	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58943600-58975400	Weak transcription	NHEK	skin
2	chr11:58949400-58973400	Weak transcription	Right Ventricle	heart
3	chr11:58950000-58978400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:58950400-58972200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:58955000-58967200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:58955400-58970800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:58956400-58977400	Weak transcription	Hela-S3	cervix
8	chr11:58957000-58967600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:58958600-58968400	Strong transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:58959200-58967600	Strong transcription	Duodenum Mucosa	Duodenum
11	chr11:58959400-58968400	Strong transcription	Fetal Intestine Large	intestine
12	chr11:58959400-58968800	Weak transcription	HepG2	liver
13	chr11:58959600-58974600	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr11:58959800-58968400	Strong transcription	Fetal Intestine Small	intestine
15	chr11:58959800-58968400	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr11:58960400-58974800	Weak transcription	Aorta	Aorta
17	chr11:58962000-58967600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:58962200-58969400	Genic enhancers	Adipose Nuclei	Adipose
19	chr11:58962800-58975000	Genic enhancers	Primary B cells from peripheral blood	blood
20	chr11:58963000-58968800	Weak transcription	Esophagus	oesophagus
21	chr11:58963200-58968400	Weak transcription	Spleen	Spleen
22	chr11:58963200-58972200	Weak transcription	Small Intestine	intestine
23	chr11:58963400-58973800	Weak transcription	Primary T cells from cord blood	blood
24	chr11:58963600-58969000	Genic enhancers	Primary B cells from cord blood	blood
25	chr11:58964200-58968400	Weak transcription	Colonic Mucosa	Colon
26	chr11:58964200-58976000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:58964400-58967200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:58964400-58968200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:58964400-58977400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:58964600-58966800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:58964600-58967000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr11:58964600-58968600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:58964600-58968800	Weak transcription	HMEC	breast
34	chr11:58964600-58969200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:58964600-58971800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:58964600-58972000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr11:58964800-58966800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:58964800-58967600	Genic enhancers	Fetal Stomach	stomach
39	chr11:58964800-58967800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr11:58964800-58968400	Weak transcription	Gastric	stomach
41	chr11:58964800-58968600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:58964800-58972200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr11:58964800-58975600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr11:58965000-58966800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:58965000-58968600	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr11:58965000-58969400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:58965200-58966600	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr11:58965200-58966800	Enhancers	Fetal Heart	heart
49	chr11:58965200-58968600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:58965400-58969400	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links