Variant report
| Variant | rs11231298 |
|---|---|
| Chromosome Location | chr11:62768095-62768096 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:62761602..62764787-chr11:62764797..62768137,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000149452 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1004836 | 0.85[AMR][1000 genomes] |
| rs11231283 | 0.85[AMR][1000 genomes] |
| rs11231291 | 0.85[AMR][1000 genomes] |
| rs11231292 | 0.85[AMR][1000 genomes] |
| rs11231293 | 0.85[AMR][1000 genomes] |
| rs11820657 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11828074 | 0.85[AMR][1000 genomes] |
| rs11828160 | 0.85[AMR][1000 genomes] |
| rs12276943 | 0.85[AMR][1000 genomes] |
| rs12281345 | 0.93[AFR][1000 genomes] |
| rs12293329 | 0.85[AMR][1000 genomes] |
| rs12293966 | 0.85[AMR][1000 genomes] |
| rs12295679 | 0.85[AMR][1000 genomes] |
| rs57066277 | 0.85[AMR][1000 genomes] |
| rs57932955 | 0.85[AMR][1000 genomes] |
| rs58855055 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60359411 | 0.85[AMR][1000 genomes] |
| rs61380596 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61510834 | 0.85[AMR][1000 genomes] |
| rs67603137 | 0.85[AMR][1000 genomes] |
| rs7125335 | 0.85[AMR][1000 genomes] |
| rs73492018 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7950683 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532283 | chr11:62201358-62863475 | Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 1433 gene(s) | inside rSNPs | diseases |
| 2 | nsv1041770 | chr11:62610353-62871767 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 263 gene(s) | inside rSNPs | diseases |
| 3 | esv34011 | chr11:62652779-62993702 | Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:62768000-62768600 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr11:62768000-62768600 | Enhancers | Fetal Intestine Large | intestine |
