Variant report

Variant	rs7125335
Chromosome Location	chr11:62727260-62727261
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:62722116..62724580-chr11:62726196..62729146,2	MCF-7	breast:
2	chr11:62725805..62728955-chr11:62729371..62732018,3	MCF-7	breast:
3	chr11:62609035..62611358-chr11:62724523..62728104,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133316	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1004836	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs11231281	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11231282	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11231283	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231291	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231292	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231293	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231298	0.85[AMR][1000 genomes]
rs11820657	0.85[AMR][1000 genomes]
rs11828074	0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828160	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12276943	0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289572	0.85[YRI][hapmap]
rs12293329	0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293966	0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295679	0.87[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56057734	0.83[AFR][1000 genomes]
rs57066277	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57932955	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58855055	0.85[AMR][1000 genomes]
rs60359411	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60642802	0.90[AFR][1000 genomes]
rs61380596	0.85[AMR][1000 genomes]
rs61510834	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs67603137	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126908	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73492018	0.85[AMR][1000 genomes]
rs7950683	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532283	chr11:62201358-62863475	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1433 gene(s)	inside rSNPs	diseases
2	nsv1041770	chr11:62610353-62871767	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	263 gene(s)	inside rSNPs	diseases
3	esv34011	chr11:62652779-62993702	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62725800-62727400	Enhancers	Brain Germinal Matrix	brain
2	chr11:62725800-62727400	Enhancers	Lung	lung
3	chr11:62725800-62727400	Enhancers	Psoas Muscle	Psoas
4	chr11:62725800-62727400	Enhancers	Right Ventricle	heart
5	chr11:62725800-62727600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:62725800-62727600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr11:62725800-62728200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr11:62725800-62728800	Enhancers	Fetal Muscle Trunk	muscle
9	chr11:62725800-62729000	Enhancers	Fetal Muscle Leg	muscle
10	chr11:62726000-62727400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:62726000-62727400	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr11:62726000-62727400	Enhancers	Fetal Kidney	kidney
13	chr11:62726000-62727400	Enhancers	Rectal Smooth Muscle	rectum
14	chr11:62726000-62727600	Enhancers	Fetal Stomach	stomach
15	chr11:62726200-62727400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:62726200-62727400	Enhancers	Colon Smooth Muscle	Colon
17	chr11:62726200-62727400	Enhancers	Placenta	Placenta
18	chr11:62726600-62727400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:62726800-62728800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:62727000-62731800	Weak transcription	Pancreas	Pancrea
21	chr11:62727200-62728400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:62727200-62728400	Weak transcription	Fetal Brain Male	brain
23	chr11:62727200-62728600	Weak transcription	Spleen	Spleen
24	chr11:62727200-62730000	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links