Variant report

Variant	rs7950683
Chromosome Location	chr11:62728287-62728288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:62722116..62724580-chr11:62726196..62729146,2	MCF-7	breast:
2	chr11:62725805..62728955-chr11:62729371..62732018,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1004836	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs11231281	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11231282	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11231283	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231291	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231292	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231293	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231298	0.85[AMR][1000 genomes]
rs11820657	0.85[MKK][hapmap];0.85[AMR][1000 genomes]
rs11828074	0.87[ASW][hapmap];0.93[LWK][hapmap];0.87[MKK][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828160	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12276943	0.93[ASW][hapmap];0.88[LWK][hapmap];0.87[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289572	0.88[YRI][hapmap]
rs12293329	0.93[ASW][hapmap];0.96[LWK][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293966	0.82[LWK][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295679	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs56057734	0.82[AFR][1000 genomes]
rs57066277	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57932955	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58855055	0.85[AMR][1000 genomes]
rs60359411	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60642802	0.89[AFR][1000 genomes]
rs61380596	0.85[AMR][1000 genomes]
rs61510834	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs67603137	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125335	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126908	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73492018	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532283	chr11:62201358-62863475	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1433 gene(s)	inside rSNPs	diseases
2	nsv1041770	chr11:62610353-62871767	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	263 gene(s)	inside rSNPs	diseases
3	esv34011	chr11:62652779-62993702	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62725800-62728800	Enhancers	Fetal Muscle Trunk	muscle
2	chr11:62725800-62729000	Enhancers	Fetal Muscle Leg	muscle
3	chr11:62726800-62728800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:62727000-62731800	Weak transcription	Pancreas	Pancrea
5	chr11:62727200-62728400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:62727200-62728400	Weak transcription	Fetal Brain Male	brain
7	chr11:62727200-62728600	Weak transcription	Spleen	Spleen
8	chr11:62727200-62730000	Weak transcription	Ovary	ovary
9	chr11:62727600-62728800	Weak transcription	Fetal Stomach	stomach

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